HHsearch alignment for GI: 254780334 and conserved domain: COG2256

>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair].
Probab=96.83  E-value=0.0031  Score=43.11  Aligned_cols=65  Identities=23%  Similarity=0.278  Sum_probs=44.3

Q ss_pred             CCCCEECCCCCCCCCCCCCCCCHHHHHHHCCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHCCCCCEEEEEC
Q ss_conf             656403133345566632378124888865985787089995498751889999999998503981999986
Q gi|254780334|r   55 SISLFMLSEESIEEESRIQTHIDELDRVTGGGFVRGSVILVGGDPGIGKSTLLMQTAASLAYKKHRITYVSG  126 (479)
Q Consensus        55 ~~~~~~l~~~~~~~~~Ri~TGi~eLDrvLGGGl~~Gs~~Li~G~PGvGKSTL~Lqia~~~a~~g~~vlYvS~  126 (479)
T Consensus        17 rmRP~~lde~vGQ~H--Llg~~~~lrr~v~~~~l~--SmIl~GPPG~GKTTlA~liA~~~~---~~f~~~sA   81 (436)
T COG2256          17 RLRPKSLDEVVGQEH--LLGEGKPLRRAVEAGHLH--SMILWGPPGTGKTTLARLIAGTTN---AAFEALSA   81 (436)
T ss_pred             HHCCCCHHHHCCHHH--HHCCCCHHHHHHHCCCCC--EEEEECCCCCCHHHHHHHHHHHHC---CCEEEECC
T ss_conf             709777878557186--618994389999649986--057778999888899999987617---76699515