HHsearch alignment for GI: 254780334 and conserved domain: COG2256
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair].
Probab=96.83 E-value=0.0031 Score=43.11 Aligned_cols=65 Identities=23% Similarity=0.278 Sum_probs=44.3
Q ss_pred CCCCEECCCCCCCCCCCCCCCCHHHHHHHCCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHCCCCCEEEEEC
Q ss_conf 656403133345566632378124888865985787089995498751889999999998503981999986
Q gi|254780334|r 55 SISLFMLSEESIEEESRIQTHIDELDRVTGGGFVRGSVILVGGDPGIGKSTLLMQTAASLAYKKHRITYVSG 126 (479)
Q Consensus 55 ~~~~~~l~~~~~~~~~Ri~TGi~eLDrvLGGGl~~Gs~~Li~G~PGvGKSTL~Lqia~~~a~~g~~vlYvS~ 126 (479)
T Consensus 17 rmRP~~lde~vGQ~H--Llg~~~~lrr~v~~~~l~--SmIl~GPPG~GKTTlA~liA~~~~---~~f~~~sA 81 (436)
T COG2256 17 RLRPKSLDEVVGQEH--LLGEGKPLRRAVEAGHLH--SMILWGPPGTGKTTLARLIAGTTN---AAFEALSA 81 (436)
T ss_pred HHCCCCHHHHCCHHH--HHCCCCHHHHHHHCCCCC--EEEEECCCCCCHHHHHHHHHHHHC---CCEEEECC
T ss_conf 709777878557186--618994389999649986--057778999888899999987617---76699515