HHsearch alignment for GI: 254780334 and conserved domain: COG2909
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription].
Probab=97.31 E-value=0.0017 Score=45.13 Aligned_cols=119 Identities=21% Similarity=0.289 Sum_probs=74.4
Q ss_pred HHHHHCCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHCCCCCEEEEECCCCHHHHHHHHHHC--------CCCCCCHH-E
Q ss_conf 88886598578708999549875188999999999850398199998646304788887520--------15775100-0
Q gi|254780334|r 79 LDRVTGGGFVRGSVILVGGDPGIGKSTLLMQTAASLAYKKHRITYVSGEEAIGQIRLRAQRL--------NTINSSVY-I 149 (479)
Q Consensus 79 LDrvLGGGl~~Gs~~Li~G~PGvGKSTL~Lqia~~~a~~g~~vlYvS~EEs~~Qi~~Ra~Rl--------~~~~~~i~-~ 149 (479)
T Consensus 28 ~~~L~~~--~~~RL~li~APAGfGKttl~aq~~~-~~~~~~~v~Wlslde~dndp~rF~~yLi~al~~~~p~~~~~a~~l 104 (894)
T COG2909 28 LDRLRRA--NDYRLILISAPAGFGKTTLLAQWRE-LAADGAAVAWLSLDESDNDPARFLSYLIAALQQATPTLGDEAQTL 104 (894)
T ss_pred HHHHHHC--CCCEEEEEECCCCCCHHHHHHHHHH-HCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHCCCCCHHHHHH
T ss_conf 9998607--7843899867887758899999998-647655435764577667889999999999987472324789999
Q ss_pred EC-------CCCHHHHHHHHHHCCCCCEEEECHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCCC
Q ss_conf 03-------47889999999731698289972168766542044556367999999999997530797
Q gi|254780334|r 150 AI-------ETNVEDIIATLITNEKPDLVIIDSIQTLWSQTAESSPGTVIQVRTSVQAMIQYAKKNGV 210 (479)
Q Consensus 150 ~~-------e~~l~~il~~~i~~~~~~~vVIDSIQtl~~~~~~s~~GsvsQvre~~~~L~~~AK~~~i 210 (479)
T Consensus 105 ~q~~~~~~l~~l~~~L~~Ela~~~~pl~LVlDDyHli~~~~----------l~~~l~fLl~~~P~~l~ 162 (894)
T COG2909 105 LQKHQYVSLESLLSSLLNELASYEGPLYLVLDDYHLISDPA----------LHEALRFLLKHAPENLT 162 (894)
T ss_pred HHHCCCCCHHHHHHHHHHHHHHHCCCEEEEECCCCCCCCCC----------HHHHHHHHHHHCCCCEE
T ss_conf 87335565999999999998751496499953532257602----------89999999971998749