HHsearch alignment for GI: 254780334 and conserved domain: COG3480
>COG3480 SdrC Predicted secreted protein containing a PDZ domain [Signal transduction mechanisms].
Probab=98.04 E-value=1.2e-05 Score=60.68 Aligned_cols=149 Identities=19% Similarity=0.265 Sum_probs=102.7
Q ss_pred CCCCEEEEEEEC--CCCCCEEEEEEEECCCCCCCCEEEEECCCHHHHHHHHHHHHHHCCCCCCCCHHHEECCCCCCCCCC
Q ss_conf 767348997304--897411553310115778772477604686665555898875111102462221001456111543
Q gi|254780334|r 294 TSPGTAVFAGIE--GTRALLVEIQSLVVPTSLGMPRRTVVGWDSSRLAMILAVLEARCNIKFGNHDVHLNIAGGYRISEP 371 (479)
Q Consensus 294 ~~~Gs~v~~~~e--G~r~~lvEvQALv~~~~~~~p~R~~~G~d~~rl~~llAvl~k~~~~~~~~~Di~~nv~gG~~i~~p 371 (479)
T Consensus 174 ~k~Gd~VtI~~~r~~~~~~~~~~tl~~~----~~~g~~giGIs---------l~d~~-~-v~~~~~V~~~~~---~IGGP 235 (342)
T COG3480 174 KKPGDEVTIDYERHNETPEIVTITLIKN----DDNGKAGIGIS---------LVDAP-E-VWAPPDVDFNTE---NIGGP 235 (342)
T ss_pred CCCCCEEEEEEEECCCCCCEEEEEEEEE----CCCCCCEEEEE---------EECCC-C-CCCCCCEEEECC---CCCCC
T ss_conf 6889769999995169872689999960----46886412158---------63476-5-456872675124---47997
Q ss_pred CCCHHHHHHHHHHHCCCCCC--CCEEEEEEEECCCEEEEECCHHHHHHHHHHCCCCEEEECHHHHHHC------------
Q ss_conf 25879999999972488688--7859998742473163407889999999976998999775765322------------
Q gi|254780334|r 372 AADVAVAAALISSILSIPLP--SDFVYFGEVSLSGSVRAVGHMQQRLKEAEKIGFLSGVFPESAKGEC------------ 437 (479)
Q Consensus 372 a~DLaia~ailSs~~~~~~~--~~~~~~GEl~L~GeIR~V~~i~~ri~eA~~~G~~~~iiP~~n~~e~------------ 437 (479)
T Consensus 236 SAGLMFSL~Iy~qlt~~DL~~g~~IAGTGTI~~DG~VG~IGGI~qKvvAA~~AGA~vFf~P~~~~~e~~s~sny~~a~~~ 315 (342)
T COG3480 236 SAGLMFSLAIYDQLTKGDLTGGRFIAGTGTIEVDGKVGPIGGIDQKVVAAAKAGADVFFVPADNCAEEMSDSNYDEALVA 315 (342)
T ss_pred CHHHEEEHHHHHHCCCCCCCCCEEEECCEEECCCCCCCCCCCHHHHHHHHHHCCCCEEEECCCCCCHHHCCCCHHHHHHH
T ss_conf 54333529888640531135866984111334688335745476776778765985998418762022013888888998
Q ss_pred -C--CCCEEEEEECCHHHHHHHHHCC
Q ss_conf -8--5880899838399999986147
Q gi|254780334|r 438 -K--IGMLDRQYIKNLSDLVKKITAL 460 (479)
Q Consensus 438 -~--~~~i~i~~v~~l~e~i~~l~~~ 460 (479)
T Consensus 316 ak~l~t~mkivpv~T~q~aldyl~~~ 341 (342)
T COG3480 316 AEDLSTAMKIVPVKTLQEALDYLEKL 341 (342)
T ss_pred HHHHCCCCEEEEECHHHHHHHHHHCC
T ss_conf 87540362478510003266675427