HHsearch alignment for GI: 254780334 and conserved domain: PRK00771

>PRK00771 signal recognition particle protein Srp54; Provisional.
Probab=97.63  E-value=0.0044  Score=42.05  Aligned_cols=99  Identities=21%  Similarity=0.288  Sum_probs=71.4

Q ss_pred             CHHHHHHHCCC---CCCCCEEEEECCCCCCHHHHHHHHHHHHHCCCCCEEEEECCC----CHHHHHHHHHHCCCCCCCHH
Q ss_conf             12488886598---578708999549875188999999999850398199998646----30478888752015775100
Q gi|254780334|r   76 IDELDRVTGGG---FVRGSVILVGGDPGIGKSTLLMQTAASLAYKKHRITYVSGEE----AIGQIRLRAQRLNTINSSVY  148 (479)
Q Consensus        76 i~eLDrvLGGG---l~~Gs~~Li~G~PGvGKSTL~Lqia~~~a~~g~~vlYvS~EE----s~~Qi~~Ra~Rl~~~~~~i~  148 (479)
T Consensus        80 ~~eL~~llg~~~~~~~kP~Vim~vGlqGsGKTTT~aKLA~~~kk~g~kv~lvaaDt~RpaA~eQL~~la~~~~v~~~--~  157 (433)
T PRK00771         80 YEELVKLLGEEAEILLKPQTILLVGLQGSGKTTTAAKLARYFQKKGLKVGVICADTWRPGAYEQLKQLCEKINVPFY--G  157 (433)
T ss_pred             HHHHHHHHCCCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHCCCCCC--C
T ss_conf             99999984967656689858999737889789999999999997799467850678836899999999986388731--7


Q ss_pred             EECCCCHHHHHHHHHH-CCCCCEEEECHH
Q ss_conf             0034788999999973-169828997216
Q gi|254780334|r  149 IAIETNVEDIIATLIT-NEKPDLVIIDSI  176 (479)
Q Consensus       149 ~~~e~~l~~il~~~i~-~~~~~~vVIDSI  176 (479)
T Consensus       158 ~~~~~dp~~i~~~a~~~~k~~DvviiDTA  186 (433)
T PRK00771        158 DPKEKDAVKIVKEGLEKLKKVDVIIVDTA  186 (433)
T ss_pred             CCCCCCHHHHHHHHHHHHCCCCEEEEECC
T ss_conf             88999999999999998456988999776