HHsearch alignment for GI: 254780334 and conserved domain: PRK04301
>PRK04301 radA DNA repair and recombination protein RadA; Validated.
Probab=99.92 E-value=7.6e-23 Score=186.20 Aligned_cols=207 Identities=23% Similarity=0.370 Sum_probs=160.4
Q ss_pred CCCCCCCCCCHHHHHHHCCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHCC------CCCEEEEECCCC--HHHHHHHHH
Q ss_conf 566632378124888865985787089995498751889999999998503------981999986463--047888875
Q gi|254780334|r 67 EEESRIQTHIDELDRVTGGGFVRGSVILVGGDPGIGKSTLLMQTAASLAYK------KHRITYVSGEEA--IGQIRLRAQ 138 (479)
Q Consensus 67 ~~~~Ri~TGi~eLDrvLGGGl~~Gs~~Li~G~PGvGKSTL~Lqia~~~a~~------g~~vlYvS~EEs--~~Qi~~Ra~ 138 (479)
T Consensus 80 ~~~~~isTg~~~lD~lLgGGi~~g~ITEi~Ge~gsGKTQlc~qLav~~qlp~~~GGl~g~vvYIDTEgtF~peRi~qia~ 159 (318)
T PRK04301 80 KSIGKITTGSKELDELLGGGIETQSITEFYGEFGSGKTQICHQLAVNVQLPEEEGGLEGKAVYIDTENTFRPERIEQMAE 159 (318)
T ss_pred HCCCCCCCCCHHHHHHCCCCCCCCEEEEEECCCCCCCHHHHHHHHHHEECCHHHCCCCCCEEEEECCCCCCHHHHHHHHH
T ss_conf 34782478887888054798336707888668878703566776765337677789886379995689869799999999
Q ss_pred HCCCCC----CCHHEECCCCHHHHH------HHHHH-CCCCCEEEECHHHHHHHHHHCCCCCCHHH----HHHHHHHHHH
Q ss_conf 201577----510000347889999------99973-16982899721687665420445563679----9999999999
Q gi|254780334|r 139 RLNTIN----SSVYIAIETNVEDII------ATLIT-NEKPDLVIIDSIQTLWSQTAESSPGTVIQ----VRTSVQAMIQ 203 (479)
Q Consensus 139 Rl~~~~----~~i~~~~e~~l~~il------~~~i~-~~~~~~vVIDSIQtl~~~~~~s~~GsvsQ----vre~~~~L~~ 203 (479)
T Consensus 160 ~~g~d~~~~L~nI~v~r~~~~~~q~~~~~~~~~~~~~~~~v~LvVvDSi~alfR~e~~gr-g~l~~Rq~~L~~~l~~L~~ 238 (318)
T PRK04301 160 GLGLDPDEVLDNIHVARAYNSDHQMLLAEKAEELIKEGNNIKLVIVDSLTAHFRAEYVGR-GNLAERQQKLNKHLHDLLR 238 (318)
T ss_pred HHCCCHHHHHHCEEEEECCCHHHHHHHHHHHHHHHHHCCCCEEEEEECCHHHEEECCCCC-CCHHHHHHHHHHHHHHHHH
T ss_conf 849997898640268613998999999999999996278804999943423212104685-3099999999999999999
Q ss_pred HHHHCCCEEEEEEEECCC-CC-------CCCHHHHHHHHHEEEEEECCCCCCCCCCEEEEEEEECCCCCCCEEEEEECCC
Q ss_conf 753079789998630366-54-------3311457877530278515556665442156763202567651279985156
Q gi|254780334|r 204 YAKKNGVAMVLVGHVTKE-GQ-------IAGPRVIEHMVDAVLYFEGGTRNTQYDYRILRSVKNRFGPTDEIGVFEMSDK 275 (479)
Q Consensus 204 ~AK~~~i~vilighvTK~-G~-------iAGp~~LeH~VD~vl~~ege~~~~~~~~R~Lr~~KNRfG~t~e~gvf~m~~~ 275 (479)
T Consensus 239 lA~~~niaVvvTNQV~~~~~~~~g~~~~P~gG~~~ah~~t~Rl~Lrk----~~g~~R~~~l~~SP~lPe~~~-~F~It~~ 313 (318)
T PRK04301 239 LADLYNAAVVVTNQVMARPDAFFGDPTKPIGGHILGHTATFRIYLRK----SKGDKRIARLVDSPHLPEGEA-VFRITEE 313 (318)
T ss_pred HHHHCCCEEEEEEEEEECCCCCCCCCCCCCCCHHHHCCCCEEEEEEE----CCCCEEEEEEEECCCCCCEEE-EEEECCC
T ss_conf 99985957999613675476556887635662140301518999997----689879999977889997278-9998488
Q ss_pred CCEE
Q ss_conf 6311
Q gi|254780334|r 276 GLQE 279 (479)
Q Consensus 276 Gl~~ 279 (479)
T Consensus 314 GI~D 317 (318)
T PRK04301 314 GIRD 317 (318)
T ss_pred CCCC
T ss_conf 6379