HHsearch alignment for GI: 254780334 and conserved domain: PRK05595
>PRK05595 replicative DNA helicase; Provisional.
Probab=99.91 E-value=1.9e-22 Score=183.36 Aligned_cols=200 Identities=22% Similarity=0.309 Sum_probs=144.9
Q ss_pred CCCCCCCCCHHHHHHHCCCCCCCCEEEEECCCCCCHHHHHHHHHHHHH-CCCCCEEEEECCCCHHHHHHHHH--HCCCC-
Q ss_conf 666323781248888659857870899954987518899999999985-03981999986463047888875--20157-
Q gi|254780334|r 68 EESRIQTHIDELDRVTGGGFVRGSVILVGGDPGIGKSTLLMQTAASLA-YKKHRITYVSGEEAIGQIRLRAQ--RLNTI- 143 (479)
Q Consensus 68 ~~~Ri~TGi~eLDrvLGGGl~~Gs~~Li~G~PGvGKSTL~Lqia~~~a-~~g~~vlYvS~EEs~~Qi~~Ra~--Rl~~~- 143 (479)
T Consensus 180 ~~~Gi~TGf~~LD~~t-~Gl~~GdLiiiaaRP~mGKTa~alnia~~~a~~~g~~V~~fSlEMs~~ql~~R~ls~~s~i~~ 258 (444)
T PRK05595 180 ETTGVASGFRELDAKT-SGFQKGDMILIAARPSMGKTTFALNIAEYAALREGKSVVIFSLEMSKEQLAYKLLCSEANVDM 258 (444)
T ss_pred CCCCCCCCHHHHHHHH-CCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHCCCCC
T ss_conf 9677658847699874-599857779998579898079999999999986699379995889999999999996469884
Q ss_pred ------------------------CCCHHEECCC--CHHHHH---HHHHHCCCCCEEEECHHHHHHHHHHCCCCCCHHHH
Q ss_conf ------------------------7510000347--889999---99973169828997216876654204455636799
Q gi|254780334|r 144 ------------------------NSSVYIAIET--NVEDII---ATLITNEKPDLVIIDSIQTLWSQTAESSPGTVIQV 194 (479)
Q Consensus 144 ------------------------~~~i~~~~e~--~l~~il---~~~i~~~~~~~vVIDSIQtl~~~~~~s~~GsvsQv 194 (479)
T Consensus 259 ~~i~~g~l~~~~~~~~~~a~~~l~~~~l~i~d~~~~ti~~i~~~~r~~~~~~~~~liiiDYlqLi~~~~--~~~~r~~ev 336 (444)
T PRK05595 259 LRLRTGNLEDKDWENIARASGPLAAAKIYIDDTAGVSVMEMRSKCRRLKIEHGIDLILIDYLQLMSGGK--SSESRQQEV 336 (444)
T ss_pred CCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEEHHHHCCCCC--CCCCHHHHH
T ss_conf 423268979999999999999985489705489996489999999999987399989982376357898--888899999
Q ss_pred HHHHHHHHHHHHHCCCEEEEEEEECCCC-----------CCCCHHHHHHHHHEEEEEECCC----CCCCCCCEEEEEEEE
Q ss_conf 9999999997530797899986303665-----------4331145787753027851555----666544215676320
Q gi|254780334|r 195 RTSVQAMIQYAKKNGVAMVLVGHVTKEG-----------QIAGPRVIEHMVDAVLYFEGGT----RNTQYDYRILRSVKN 259 (479)
Q Consensus 195 re~~~~L~~~AK~~~i~vilighvTK~G-----------~iAGp~~LeH~VD~vl~~ege~----~~~~~~~R~Lr~~KN 259 (479)
T Consensus 337 ~~isr~LK~lAkel~ipvi~lsQLnR~~e~R~dkrP~lsDLReSG~IEqdAD~v~~l~R~~~y~~~~~~~~~~elivaKn 416 (444)
T PRK05595 337 SEISRSIKALAKEMECPVIALSQLSRAPEQRADHRPMLSDLRESGSIEQDADLVMFLYRDEYYNKETEDKNVAECIIAKQ 416 (444)
T ss_pred HHHHHHHHHHHHHHCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCHHHHCCEEEEECCHHHCCCCCCCCCCEEEEEEEC
T ss_conf 99999999999996997999702685411279999761010122303543768989654421488877788258999806
Q ss_pred CCCCCCCEEEE
Q ss_conf 25676512799
Q gi|254780334|r 260 RFGPTDEIGVF 270 (479)
Q Consensus 260 RfG~t~e~gvf 270 (479)
T Consensus 417 R~G~~G~v~~~ 427 (444)
T PRK05595 417 RNGPTGTVKLA 427 (444)
T ss_pred CCCCCCEEEEE
T ss_conf 88996159999