HHsearch alignment for GI: 254780334 and conserved domain: PRK05748

>PRK05748 replicative DNA helicase; Provisional.
Probab=99.90  E-value=3.2e-22  Score=181.62  Aligned_cols=201  Identities=20%  Similarity=0.303  Sum_probs=145.3

Q ss_pred             CCCCCCCCCHHHHHHHCCCCCCCCEEEEECCCCCCHHHHHHHHHHHHH-CCCCCEEEEECCCCHHHHHHHHH--------
Q ss_conf             666323781248888659857870899954987518899999999985-03981999986463047888875--------
Q gi|254780334|r   68 EESRIQTHIDELDRVTGGGFVRGSVILVGGDPGIGKSTLLMQTAASLA-YKKHRITYVSGEEAIGQIRLRAQ--------  138 (479)
Q Consensus        68 ~~~Ri~TGi~eLDrvLGGGl~~Gs~~Li~G~PGvGKSTL~Lqia~~~a-~~g~~vlYvS~EEs~~Qi~~Ra~--------  138 (479)
T Consensus       182 ~~~Gi~TG~~~LD~~~-~G~~~g~LiviaaRP~mGKTa~alnia~~~a~~~~~~v~~fSlEM~~~~l~~R~la~~s~v~~  260 (448)
T PRK05748        182 DITGIPTGFRDLDKMT-SGLQPNDLIIVAARPSVGKTAFALNIAQNVATKTDKNVAIFSLEMGAESLVMRMLCAEGRIDQ  260 (448)
T ss_pred             CCCEEECCHHHHHHHH-CCCCCCCEEEEEECCCCCHHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHHHHHHHHCCCH
T ss_conf             9761057827899982-798867379998479987689999999999985698089981778888999999999746777


Q ss_pred             --------------HCC-----CCCCCHHEECC--CCHHHHHH---HHHH-CCCCCEEEECHHHHHHHHHHCCCCCCHHH
Q ss_conf             --------------201-----57751000034--78899999---9973-16982899721687665420445563679
Q gi|254780334|r  139 --------------RLN-----TINSSVYIAIE--TNVEDIIA---TLIT-NEKPDLVIIDSIQTLWSQTAESSPGTVIQ  193 (479)
Q Consensus       139 --------------Rl~-----~~~~~i~~~~e--~~l~~il~---~~i~-~~~~~~vVIDSIQtl~~~~~~s~~GsvsQ  193 (479)
T Consensus       261 ~~i~~g~l~~~~~~~~~~a~~~l~~~~l~i~d~~~~ti~~i~~~~r~~~~~~~~~~~vviDYlqli~~~~~-~~~~r~~e  339 (448)
T PRK05748        261 QKLRTGQLTDEDWPKLTIAVGSLSDAPIYIDDTPGIKVTEIRARCRRLAQEHGGLGLIVIDYLQLIQGSGR-SGENRQQE  339 (448)
T ss_pred             HHHHCCCCCHHHHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHHHHHHCCCCCEEEEEHHHHCCCCCC-CCCCHHHH
T ss_conf             77762899999999999999998659837855898868999999999999759988999716864477787-76439999


Q ss_pred             HHHHHHHHHHHHHHCCCEEEEEEEECCCC-----------CCCCHHHHHHHHHEEEEEECCC-CCC---CCCCEEEEEEE
Q ss_conf             99999999997530797899986303665-----------4331145787753027851555-666---54421567632
Q gi|254780334|r  194 VRTSVQAMIQYAKKNGVAMVLVGHVTKEG-----------QIAGPRVIEHMVDAVLYFEGGT-RNT---QYDYRILRSVK  258 (479)
Q Consensus       194 vre~~~~L~~~AK~~~i~vilighvTK~G-----------~iAGp~~LeH~VD~vl~~ege~-~~~---~~~~R~Lr~~K  258 (479)
T Consensus       340 v~~isr~lK~lAkel~ipvi~lsQLnR~~e~R~~krP~lsDLr~SG~IEqdAD~v~~l~R~~~y~~~~~~~~~~e~ivaK  419 (448)
T PRK05748        340 VSEISRSLKALAKELKVPVIALSQLSRGVEQRQDKRPVMSDIRESGSIEQDADIVAFLYRDDYYDEETENKNTIEIIIGK  419 (448)
T ss_pred             HHHHHHHHHHHHHHHCCCEEEECCCCCCCCCCCCCCCCHHHHCCCCCCHHHCCEEEEECCHHHCCCCCCCCCEEEEEEEC
T ss_conf             99999999999999699889970268432225899987545224453032076898965343238888889827999972


Q ss_pred             ECCCCCCCEEEE
Q ss_conf             025676512799
Q gi|254780334|r  259 NRFGPTDEIGVF  270 (479)
Q Consensus       259 NRfG~t~e~gvf  270 (479)
T Consensus       420 nR~G~~g~v~~~  431 (448)
T PRK05748        420 QRNGPVGTVRLA  431 (448)
T ss_pred             CCCCCCCEEEEE
T ss_conf             689986059999