HHsearch alignment for GI: 254780334 and conserved domain: PRK05748
>PRK05748 replicative DNA helicase; Provisional.
Probab=99.90 E-value=3.2e-22 Score=181.62 Aligned_cols=201 Identities=20% Similarity=0.303 Sum_probs=145.3
Q ss_pred CCCCCCCCCHHHHHHHCCCCCCCCEEEEECCCCCCHHHHHHHHHHHHH-CCCCCEEEEECCCCHHHHHHHHH--------
Q ss_conf 666323781248888659857870899954987518899999999985-03981999986463047888875--------
Q gi|254780334|r 68 EESRIQTHIDELDRVTGGGFVRGSVILVGGDPGIGKSTLLMQTAASLA-YKKHRITYVSGEEAIGQIRLRAQ-------- 138 (479)
Q Consensus 68 ~~~Ri~TGi~eLDrvLGGGl~~Gs~~Li~G~PGvGKSTL~Lqia~~~a-~~g~~vlYvS~EEs~~Qi~~Ra~-------- 138 (479)
T Consensus 182 ~~~Gi~TG~~~LD~~~-~G~~~g~LiviaaRP~mGKTa~alnia~~~a~~~~~~v~~fSlEM~~~~l~~R~la~~s~v~~ 260 (448)
T PRK05748 182 DITGIPTGFRDLDKMT-SGLQPNDLIIVAARPSVGKTAFALNIAQNVATKTDKNVAIFSLEMGAESLVMRMLCAEGRIDQ 260 (448)
T ss_pred CCCEEECCHHHHHHHH-CCCCCCCEEEEEECCCCCHHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHHHHHHHHCCCH
T ss_conf 9761057827899982-798867379998479987689999999999985698089981778888999999999746777
Q ss_pred --------------HCC-----CCCCCHHEECC--CCHHHHHH---HHHH-CCCCCEEEECHHHHHHHHHHCCCCCCHHH
Q ss_conf --------------201-----57751000034--78899999---9973-16982899721687665420445563679
Q gi|254780334|r 139 --------------RLN-----TINSSVYIAIE--TNVEDIIA---TLIT-NEKPDLVIIDSIQTLWSQTAESSPGTVIQ 193 (479)
Q Consensus 139 --------------Rl~-----~~~~~i~~~~e--~~l~~il~---~~i~-~~~~~~vVIDSIQtl~~~~~~s~~GsvsQ 193 (479)
T Consensus 261 ~~i~~g~l~~~~~~~~~~a~~~l~~~~l~i~d~~~~ti~~i~~~~r~~~~~~~~~~~vviDYlqli~~~~~-~~~~r~~e 339 (448)
T PRK05748 261 QKLRTGQLTDEDWPKLTIAVGSLSDAPIYIDDTPGIKVTEIRARCRRLAQEHGGLGLIVIDYLQLIQGSGR-SGENRQQE 339 (448)
T ss_pred HHHHCCCCCHHHHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHHHHHHCCCCCEEEEEHHHHCCCCCC-CCCCHHHH
T ss_conf 77762899999999999999998659837855898868999999999999759988999716864477787-76439999
Q ss_pred HHHHHHHHHHHHHHCCCEEEEEEEECCCC-----------CCCCHHHHHHHHHEEEEEECCC-CCC---CCCCEEEEEEE
Q ss_conf 99999999997530797899986303665-----------4331145787753027851555-666---54421567632
Q gi|254780334|r 194 VRTSVQAMIQYAKKNGVAMVLVGHVTKEG-----------QIAGPRVIEHMVDAVLYFEGGT-RNT---QYDYRILRSVK 258 (479)
Q Consensus 194 vre~~~~L~~~AK~~~i~vilighvTK~G-----------~iAGp~~LeH~VD~vl~~ege~-~~~---~~~~R~Lr~~K 258 (479)
T Consensus 340 v~~isr~lK~lAkel~ipvi~lsQLnR~~e~R~~krP~lsDLr~SG~IEqdAD~v~~l~R~~~y~~~~~~~~~~e~ivaK 419 (448)
T PRK05748 340 VSEISRSLKALAKELKVPVIALSQLSRGVEQRQDKRPVMSDIRESGSIEQDADIVAFLYRDDYYDEETENKNTIEIIIGK 419 (448)
T ss_pred HHHHHHHHHHHHHHHCCCEEEECCCCCCCCCCCCCCCCHHHHCCCCCCHHHCCEEEEECCHHHCCCCCCCCCEEEEEEEC
T ss_conf 99999999999999699889970268432225899987545224453032076898965343238888889827999972
Q ss_pred ECCCCCCCEEEE
Q ss_conf 025676512799
Q gi|254780334|r 259 NRFGPTDEIGVF 270 (479)
Q Consensus 259 NRfG~t~e~gvf 270 (479)
T Consensus 420 nR~G~~g~v~~~ 431 (448)
T PRK05748 420 QRNGPVGTVRLA 431 (448)
T ss_pred CCCCCCCEEEEE
T ss_conf 689986059999