HHsearch alignment for GI: 254780334 and conserved domain: PRK06067
>PRK06067 flagellar accessory protein FlaH; Validated.
Probab=99.94 E-value=3.1e-25 Score=203.68 Aligned_cols=206 Identities=22% Similarity=0.283 Sum_probs=148.2
Q ss_pred CCCCCCCCCCCCHHHHHHHCCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHCCCCCEEEEECCCCHHHHHHHHHHCCCCC
Q ss_conf 45566632378124888865985787089995498751889999999998503981999986463047888875201577
Q gi|254780334|r 65 SIEEESRIQTHIDELDRVTGGGFVRGSVILVGGDPGIGKSTLLMQTAASLAYKKHRITYVSGEEAIGQIRLRAQRLNTIN 144 (479)
Q Consensus 65 ~~~~~~Ri~TGi~eLDrvLGGGl~~Gs~~Li~G~PGvGKSTL~Lqia~~~a~~g~~vlYvS~EEs~~Qi~~Ra~Rl~~~~ 144 (479)
T Consensus 7 ~~~~~e~i~tGi~~lD~~l~GG~p~g~~~li~G~~G~GKt~~~~~f~~~~~~~g~~~~~~~~ee~~~~~~~~~~~~g~dl 86 (241)
T PRK06067 7 GEEEKEIISTGNEEIDRKLGGGIPFGSLILIEGENDTGKSVLSQQFVWGALNQGKRGLAITTENTSKSYLKQMESLKLDI 86 (241)
T ss_pred CCCCCCCCCCCCHHHHHHCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHCCCEEEEEEECCCHHHHHHHHHHCCCCH
T ss_conf 54314525668755786506997799089998079988799999999999867982999994289999999999839985
Q ss_pred CCHH------EE---------CCCCHHHHH---HHHHHCCCCCEEEECHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHH
Q ss_conf 5100------00---------347889999---99973169828997216876654204455636799999999999753
Q gi|254780334|r 145 SSVY------IA---------IETNVEDII---ATLITNEKPDLVIIDSIQTLWSQTAESSPGTVIQVRTSVQAMIQYAK 206 (479)
Q Consensus 145 ~~i~------~~---------~e~~l~~il---~~~i~~~~~~~vVIDSIQtl~~~~~~s~~GsvsQvre~~~~L~~~AK 206 (479)
T Consensus 87 ~~~~~~G~L~i~~~~~~~~~~~~~~~~~ll~~l~~~v~~~~~~~vVIDSls~l~~~------~~~~~~~~~l~~l~~l~- 159 (241)
T PRK06067 87 SDFFIWGYLRIFPLNTEGFEWNSELAEKLLDLIIEFIKRRREEVIIIDSLTIFATY------ASEDDVLNFFTECKNLC- 159 (241)
T ss_pred HHHHHCCCCEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHCCCEEEECCHHHHHCC------CCHHHHHHHHHHHHHHH-
T ss_conf 99986697057832411134215568999999999999719989999280175413------88899999999999999-
Q ss_pred HCCCEEEEEEEECC-CCCCCCHHHHHHHHHEEEEEECCCCCCCCCCEEEEEEEECCCCCCCEE---EEEECCC-CCEEEC
Q ss_conf 07978999863036-654331145787753027851555666544215676320256765127---9985156-631101
Q gi|254780334|r 207 KNGVAMVLVGHVTK-EGQIAGPRVIEHMVDAVLYFEGGTRNTQYDYRILRSVKNRFGPTDEIG---VFEMSDK-GLQEVS 281 (479)
Q Consensus 207 ~~~i~vilighvTK-~G~iAGp~~LeH~VD~vl~~ege~~~~~~~~R~Lr~~KNRfG~t~e~g---vf~m~~~-Gl~~v~ 281 (479)
T Consensus 160 ~~g~tvllt~~~~~~~~~~~--~~i~~vaD~vI~Lr~~~~-~g~~~R~L~V~K~R-Gs~h~~g~~i~F~I~~g~GI~v~P 235 (241)
T PRK06067 160 DNGKTILITLHPYAFSEDTL--VRIRSICDVHLKLRKEQV-GDRYVKVLEVVKLR-GARKTTGNIISFDVDPGFGIKIIP 235 (241)
T ss_pred HCCCEEEEEECCCCCCCCCC--CCEEEEEEEEEEEEEEEE-CCEEEEEEEEEEEC-CCCCCCCCEEEEEECCCCCEEEEE
T ss_conf 68988999905676476643--124899899999587843-99999999999915-998998888889983898759986