HHsearch alignment for GI: 254780334 and conserved domain: PRK06315
>PRK06315 type III secretion system ATPase; Provisional.
Probab=97.68 E-value=0.0025 Score=43.81 Aligned_cols=108 Identities=20% Similarity=0.260 Sum_probs=67.2
Q ss_pred CCCCCCCCHHHHHHHCCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHCCCCCEEEEECCCCHHHHHHHHHH-CC--CCCC
Q ss_conf 66323781248888659857870899954987518899999999985039819999864630478888752-01--5775
Q gi|254780334|r 69 ESRIQTHIDELDRVTGGGFVRGSVILVGGDPGIGKSTLLMQTAASLAYKKHRITYVSGEEAIGQIRLRAQR-LN--TINS 145 (479)
Q Consensus 69 ~~Ri~TGi~eLDrvLGGGl~~Gs~~Li~G~PGvGKSTL~Lqia~~~a~~g~~vlYvS~EEs~~Qi~~Ra~R-l~--~~~~ 145 (479)
T Consensus 145 ~epl~TGIraID~ll--pig~GQR~gIfagsGvGKs~Ll~~i~~~~~~adv~V~~lIGeRgrE-v~efie~~~~~~~l~r 221 (442)
T PRK06315 145 RTILSTGVRCIDGML--TVARGQRIGIFAGAGVGKSSLLGMIARNAEEADVNVIALIGERGRE-VREFIEGDLGEEGMKR 221 (442)
T ss_pred CCCCCCCCEEECCCC--CCCCCCEEECCCCCCCCHHHHHHHHHHHHCCCCCEEEEEECCCCHH-HHHHHHHHHCCCCCCC
T ss_conf 875336853001127--7023777640389999888999999974403893499995511379-9999997520145213
Q ss_pred CHHEECCCC---HH---------HHHHHHHHCCCCCEEEECHHHHH
Q ss_conf 100003478---89---------99999973169828997216876
Q gi|254780334|r 146 SVYIAIETN---VE---------DIIATLITNEKPDLVIIDSIQTL 179 (479)
Q Consensus 146 ~i~~~~e~~---l~---------~il~~~i~~~~~~~vVIDSIQtl 179 (479)
T Consensus 222 svvV~atsd~p~~~R~~a~~~A~aiAEyFrd~G~~VLl~~DslTR~ 267 (442)
T PRK06315 222 SVIVVSTSDQSSQLRLNAAYVGTAIAEYFRDQGKTVVLMMDSVTRF 267 (442)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCHHH
T ss_conf 3999617999878875558877789999986899489994370288