HHsearch alignment for GI: 254780334 and conserved domain: PRK06315

>PRK06315 type III secretion system ATPase; Provisional.
Probab=97.68  E-value=0.0025  Score=43.81  Aligned_cols=108  Identities=20%  Similarity=0.260  Sum_probs=67.2

Q ss_pred             CCCCCCCCHHHHHHHCCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHCCCCCEEEEECCCCHHHHHHHHHH-CC--CCCC
Q ss_conf             66323781248888659857870899954987518899999999985039819999864630478888752-01--5775
Q gi|254780334|r   69 ESRIQTHIDELDRVTGGGFVRGSVILVGGDPGIGKSTLLMQTAASLAYKKHRITYVSGEEAIGQIRLRAQR-LN--TINS  145 (479)
Q Consensus        69 ~~Ri~TGi~eLDrvLGGGl~~Gs~~Li~G~PGvGKSTL~Lqia~~~a~~g~~vlYvS~EEs~~Qi~~Ra~R-l~--~~~~  145 (479)
T Consensus       145 ~epl~TGIraID~ll--pig~GQR~gIfagsGvGKs~Ll~~i~~~~~~adv~V~~lIGeRgrE-v~efie~~~~~~~l~r  221 (442)
T PRK06315        145 RTILSTGVRCIDGML--TVARGQRIGIFAGAGVGKSSLLGMIARNAEEADVNVIALIGERGRE-VREFIEGDLGEEGMKR  221 (442)
T ss_pred             CCCCCCCCEEECCCC--CCCCCCEEECCCCCCCCHHHHHHHHHHHHCCCCCEEEEEECCCCHH-HHHHHHHHHCCCCCCC
T ss_conf             875336853001127--7023777640389999888999999974403893499995511379-9999997520145213


Q ss_pred             CHHEECCCC---HH---------HHHHHHHHCCCCCEEEECHHHHH
Q ss_conf             100003478---89---------99999973169828997216876
Q gi|254780334|r  146 SVYIAIETN---VE---------DIIATLITNEKPDLVIIDSIQTL  179 (479)
Q Consensus       146 ~i~~~~e~~---l~---------~il~~~i~~~~~~~vVIDSIQtl  179 (479)
T Consensus       222 svvV~atsd~p~~~R~~a~~~A~aiAEyFrd~G~~VLl~~DslTR~  267 (442)
T PRK06315        222 SVIVVSTSDQSSQLRLNAAYVGTAIAEYFRDQGKTVVLMMDSVTRF  267 (442)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCHHH
T ss_conf             3999617999878875558877789999986899489994370288