HHsearch alignment for GI: 254780334 and conserved domain: PRK06321
>PRK06321 replicative DNA helicase; Provisional.
Probab=99.90 E-value=3e-22 Score=181.88 Aligned_cols=201 Identities=18% Similarity=0.297 Sum_probs=145.4
Q ss_pred CCCCCCCCHHHHHHHCCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHCCC-CCEEEEECCCCHHHHHHHHH--HCCCCC-
Q ss_conf 66323781248888659857870899954987518899999999985039-81999986463047888875--201577-
Q gi|254780334|r 69 ESRIQTHIDELDRVTGGGFVRGSVILVGGDPGIGKSTLLMQTAASLAYKK-HRITYVSGEEAIGQIRLRAQ--RLNTIN- 144 (479)
Q Consensus 69 ~~Ri~TGi~eLDrvLGGGl~~Gs~~Li~G~PGvGKSTL~Lqia~~~a~~g-~~vlYvS~EEs~~Qi~~Ra~--Rl~~~~- 144 (479)
T Consensus 206 itGipTGf~~LD~lt~-Gl~~GdliviaaRPsmGKTalalnia~~~a~~~~~~v~~fSLEMs~~ql~~R~ls~~s~i~~~ 284 (472)
T PRK06321 206 ISGIPTHFIDLDKMIN-GFSPSNLMILAARPAMGKTALALNIAENFCFQNRLPVGIFSLEMTVDQLIHRIICSRSEVESK 284 (472)
T ss_pred CCCCCCCHHHHHHHHC-CCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEECCCCCHHHHHHHHHHHHCCCCCC
T ss_conf 6422568488999855-988675799853899977999999999999856994699757799999999998740376755
Q ss_pred ------------------------CCHHEECC--CCHHHHH---HHHHHCCCCCEEEECHHHHHHHHHHC-CCCCCHHHH
Q ss_conf ------------------------51000034--7889999---99973169828997216876654204-455636799
Q gi|254780334|r 145 ------------------------SSVYIAIE--TNVEDII---ATLITNEKPDLVIIDSIQTLWSQTAE-SSPGTVIQV 194 (479)
Q Consensus 145 ------------------------~~i~~~~e--~~l~~il---~~~i~~~~~~~vVIDSIQtl~~~~~~-s~~GsvsQv 194 (479)
T Consensus 285 ~i~~g~l~~~e~~~~~~a~~~l~~~~l~idd~~~~ti~~i~~~~r~~k~~~~l~~vvIDYlqL~~~~~~~~~~~~r~~~i 364 (472)
T PRK06321 285 KISVGDLSGRDFQRIVSVVNEMQEHTLLIDDQPGLKITDLRARARRMKESYDIQFLIIDYLQLLSGSGTLRNSESRQTEI 364 (472)
T ss_pred CCCCCCCCHHHHHHHHHHHHHHHHCCEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEEEHHHCCCCCCCCCCCCHHHHH
T ss_conf 21047999999999999999985487578679999899999999999873899879997277416777777788899999
Q ss_pred HHHHHHHHHHHHHCCCEEEEEEEECCCC-----------CCCCHHHHHHHHHEEEEEECCC---CCCCCCCEEEEEEEEC
Q ss_conf 9999999997530797899986303665-----------4331145787753027851555---6665442156763202
Q gi|254780334|r 195 RTSVQAMIQYAKKNGVAMVLVGHVTKEG-----------QIAGPRVIEHMVDAVLYFEGGT---RNTQYDYRILRSVKNR 260 (479)
Q Consensus 195 re~~~~L~~~AK~~~i~vilighvTK~G-----------~iAGp~~LeH~VD~vl~~ege~---~~~~~~~R~Lr~~KNR 260 (479)
T Consensus 365 ~~isr~lK~lAkel~vpvi~LsQLnR~~e~r~~krP~lsDLreSG~IEqdAD~V~~l~R~~~~~~~~~~~~~e~ivaK~R 444 (472)
T PRK06321 365 SEISRMLKNLARELNIPILCLSQLSRKVEDRANHRPMMSDLRESGSIEQDSDLVMFLLRREYYDPNDKPGTAELIVAKNR 444 (472)
T ss_pred HHHHHHHHHHHHHHCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCHHHHCCEEEEECCHHHCCCCCCCCCEEEEEECCC
T ss_conf 99999999999997997999722684312279999762301264410430868999744532498788982699997267
Q ss_pred CCCCCCEEEE
Q ss_conf 5676512799
Q gi|254780334|r 261 FGPTDEIGVF 270 (479)
Q Consensus 261 fG~t~e~gvf 270 (479)
T Consensus 445 ~G~~g~v~~~ 454 (472)
T PRK06321 445 HGSIGSVPLV 454 (472)
T ss_pred CCCCCEEEEE
T ss_conf 8987259999