HHsearch alignment for GI: 254780334 and conserved domain: PRK06793
>PRK06793 fliI flagellum-specific ATP synthase; Validated.
Probab=97.35 E-value=0.018 Score=37.50 Aligned_cols=108 Identities=20% Similarity=0.254 Sum_probs=65.0
Q ss_pred CCCCCCCCHHHHHHHCCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHCCCCCEEEEECCCCHHHHHHHHHHCCC--CCCC
Q ss_conf 66323781248888659857870899954987518899999999985039819999864630478888752015--7751
Q gi|254780334|r 69 ESRIQTHIDELDRVTGGGFVRGSVILVGGDPGIGKSTLLMQTAASLAYKKHRITYVSGEEAIGQIRLRAQRLNT--INSS 146 (479)
Q Consensus 69 ~~Ri~TGi~eLDrvLGGGl~~Gs~~Li~G~PGvGKSTL~Lqia~~~a~~g~~vlYvS~EEs~~Qi~~Ra~Rl~~--~~~~ 146 (479)
T Consensus 137 ~e~l~TGIraID~l~--pigrGQR~gIfg~sGvGKstLl~~i~~~~-~adv~Vi~lIGeRgrEv~efi~~~l~~~gl~~t 213 (432)
T PRK06793 137 TDVFETGIKSIDSML--TIGIGQKIGIFAGSGVGKSTLLGMIAKNA-KADINVISLVGERGREVKDFIRKELGEEGMRKS 213 (432)
T ss_pred CCCCCCCCCHHHHCC--CCCCCCEEEEECCCCCCHHHHHHHHHHHC-CCCCEEEEEEEEECHHHHHHHHHHHHCCCCCCE
T ss_conf 874004873100015--61246266663268987899999998724-578657999888627999999998644675212
Q ss_pred HHEECCCC---HH---------HHHHHHHHCCCCCEEEECHHHHH
Q ss_conf 00003478---89---------99999973169828997216876
Q gi|254780334|r 147 VYIAIETN---VE---------DIIATLITNEKPDLVIIDSIQTL 179 (479)
Q Consensus 147 i~~~~e~~---l~---------~il~~~i~~~~~~~vVIDSIQtl 179 (479)
T Consensus 214 vvV~atsd~p~~~r~~a~~~a~aiAEyfrd~G~~VLli~DslTr~ 258 (432)
T PRK06793 214 VVVVATSDESHLMQLRAAKLATSIAEYFRDQGNNVLLMMDSVTRF 258 (432)
T ss_pred EEEEECCCCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCHHHH
T ss_conf 788725889989999887551237889986699689994567888