HHsearch alignment for GI: 254780334 and conserved domain: PRK06893
>PRK06893 DNA replication initiation factor; Validated.
Probab=97.49 E-value=0.002 Score=44.60 Aligned_cols=94 Identities=16% Similarity=0.322 Sum_probs=62.2
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHHCCCCCEEEEECCCCHHHHHHHHHHCCCCCCCHHEECCCCHHHHHHHHHHCCCC
Q ss_conf 87089995498751889999999998503981999986463047888875201577510000347889999999731698
Q gi|254780334|r 89 RGSVILVGGDPGIGKSTLLMQTAASLAYKKHRITYVSGEEAIGQIRLRAQRLNTINSSVYIAIETNVEDIIATLITNEKP 168 (479)
Q Consensus 89 ~Gs~~Li~G~PGvGKSTL~Lqia~~~a~~g~~vlYvS~EEs~~Qi~~Ra~Rl~~~~~~i~~~~e~~l~~il~~~i~~~~~ 168 (479)
T Consensus 38 ~~~~l~i~G~~gsGKTHLLqa~~~~~~~~~~~~~yi~~~~~~~--------~--------------~~~~l~~-l~--~~ 92 (229)
T PRK06893 38 KQPFFYIWGGKSSGKSHLLKAVSNHYLLNQRTAIYIPLSKSQY--------F--------------SPAVLEN-LE--QQ 92 (229)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHHHHCCCEEEEEHHHHHH--------C--------------CHHHHHH-HH--HC
T ss_conf 6987999899999889999999999997189859997377564--------0--------------6999987-65--47
Q ss_pred CEEEECHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEE
Q ss_conf 289972168766542044556367999999999997530797899986
Q gi|254780334|r 169 DLVIIDSIQTLWSQTAESSPGTVIQVRTSVQAMIQYAKKNGVAMVLVG 216 (479)
Q Consensus 169 ~~vVIDSIQtl~~~~~~s~~GsvsQvre~~~~L~~~AK~~~i~vilig 216 (479)
T Consensus 93 d~l~iDDi~~i~g~~---------~~e~~lF~l~N~l~~~~~~~ll~s 131 (229)
T PRK06893 93 DLVCLDDLQAVIGNE---------EWELAIFDLFNRIKESGKTLLLIS 131 (229)
T ss_pred CEEEEECHHHHCCCH---------HHHHHHHHHHHHHHHCCCCEEEEE
T ss_conf 979996723424883---------899999999999997599179985