HHsearch alignment for GI: 254780334 and conserved domain: PRK06936

>PRK06936 type III secretion system ATPase; Provisional.
Probab=97.32  E-value=0.0079  Score=40.19  Aligned_cols=106  Identities=21%  Similarity=0.274  Sum_probs=63.2

Q ss_pred             CCCCCCCCHHHHHHHCCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHCCCCCEEEEE-CCCCHHHHHHHHHH-CCC--CC
Q ss_conf             663237812488886598578708999549875188999999999850398199998-64630478888752-015--77
Q gi|254780334|r   69 ESRIQTHIDELDRVTGGGFVRGSVILVGGDPGIGKSTLLMQTAASLAYKKHRITYVS-GEEAIGQIRLRAQR-LNT--IN  144 (479)
Q Consensus        69 ~~Ri~TGi~eLDrvLGGGl~~Gs~~Li~G~PGvGKSTL~Lqia~~~a~~g~~vlYvS-~EEs~~Qi~~Ra~R-l~~--~~  144 (479)
T Consensus       143 ~epl~TGIraID~llt--~g~GQR~gIfagsGvGKs~Ll~~i~r~~~-ad-v~V~alIGERg-rEv~efie~~l~~~gl~  217 (439)
T PRK06936        143 ETPLSLGVRVIDGLLT--CGEGQRMGIFAAAGGGKSTLLASLIRSAE-VD-VTVLALIGERG-REVREFIESDLGEEGLR  217 (439)
T ss_pred             CCCCCCCCEEEECCCC--HHCCCEEECCCCCCCCHHHHHHHHHHHHC-CC-CEEEEEECCCH-HHHHHHHHHHHHCCCCC
T ss_conf             8742268555524686--31057010236999988999999976432-69-57999807308-99999999864125431


Q ss_pred             CCHHEECCCC---HH---------HHHHHHHHCCCCCEEEECHHHHH
Q ss_conf             5100003478---89---------99999973169828997216876
Q gi|254780334|r  145 SSVYIAIETN---VE---------DIIATLITNEKPDLVIIDSIQTL  179 (479)
Q Consensus       145 ~~i~~~~e~~---l~---------~il~~~i~~~~~~~vVIDSIQtl  179 (479)
T Consensus       218 rsvvV~atsd~p~~~R~~aa~~a~aiAEyFrd~G~~VLl~~DslTR~  264 (439)
T PRK06936        218 KAVLVVATSDRPSMERAKAGFVATSIAEYFRDQGKRVLLLMDSVTRF  264 (439)
T ss_pred             EEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCHHHH
T ss_conf             06999618989989999999887788999985898489993567899