HHsearch alignment for GI: 254780334 and conserved domain: PRK06936
>PRK06936 type III secretion system ATPase; Provisional.
Probab=97.32 E-value=0.0079 Score=40.19 Aligned_cols=106 Identities=21% Similarity=0.274 Sum_probs=63.2
Q ss_pred CCCCCCCCHHHHHHHCCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHCCCCCEEEEE-CCCCHHHHHHHHHH-CCC--CC
Q ss_conf 663237812488886598578708999549875188999999999850398199998-64630478888752-015--77
Q gi|254780334|r 69 ESRIQTHIDELDRVTGGGFVRGSVILVGGDPGIGKSTLLMQTAASLAYKKHRITYVS-GEEAIGQIRLRAQR-LNT--IN 144 (479)
Q Consensus 69 ~~Ri~TGi~eLDrvLGGGl~~Gs~~Li~G~PGvGKSTL~Lqia~~~a~~g~~vlYvS-~EEs~~Qi~~Ra~R-l~~--~~ 144 (479)
T Consensus 143 ~epl~TGIraID~llt--~g~GQR~gIfagsGvGKs~Ll~~i~r~~~-ad-v~V~alIGERg-rEv~efie~~l~~~gl~ 217 (439)
T PRK06936 143 ETPLSLGVRVIDGLLT--CGEGQRMGIFAAAGGGKSTLLASLIRSAE-VD-VTVLALIGERG-REVREFIESDLGEEGLR 217 (439)
T ss_pred CCCCCCCCEEEECCCC--HHCCCEEECCCCCCCCHHHHHHHHHHHHC-CC-CEEEEEECCCH-HHHHHHHHHHHHCCCCC
T ss_conf 8742268555524686--31057010236999988999999976432-69-57999807308-99999999864125431
Q ss_pred CCHHEECCCC---HH---------HHHHHHHHCCCCCEEEECHHHHH
Q ss_conf 5100003478---89---------99999973169828997216876
Q gi|254780334|r 145 SSVYIAIETN---VE---------DIIATLITNEKPDLVIIDSIQTL 179 (479)
Q Consensus 145 ~~i~~~~e~~---l~---------~il~~~i~~~~~~~vVIDSIQtl 179 (479)
T Consensus 218 rsvvV~atsd~p~~~R~~aa~~a~aiAEyFrd~G~~VLl~~DslTR~ 264 (439)
T PRK06936 218 KAVLVVATSDRPSMERAKAGFVATSIAEYFRDQGKRVLLLMDSVTRF 264 (439)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCHHHH
T ss_conf 06999618989989999999887788999985898489993567899