HHsearch alignment for GI: 254780334 and conserved domain: PRK07721
>PRK07721 fliI flagellum-specific ATP synthase; Validated.
Probab=97.46 E-value=0.0093 Score=39.66 Aligned_cols=108 Identities=16% Similarity=0.273 Sum_probs=65.4
Q ss_pred CCCCCCCCHHHHHHHCCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHCCCCCEEEEECCCCHHHHHHHHH-HCCC--CCC
Q ss_conf 6632378124888865985787089995498751889999999998503981999986463047888875-2015--775
Q gi|254780334|r 69 ESRIQTHIDELDRVTGGGFVRGSVILVGGDPGIGKSTLLMQTAASLAYKKHRITYVSGEEAIGQIRLRAQ-RLNT--INS 145 (479)
Q Consensus 69 ~~Ri~TGi~eLDrvLGGGl~~Gs~~Li~G~PGvGKSTL~Lqia~~~a~~g~~vlYvS~EEs~~Qi~~Ra~-Rl~~--~~~ 145 (479)
T Consensus 137 ~e~l~TGIraID~l~--tigkGQRigIf~gsGvGKs~Ll~~iar~~~-adv~V~~liGeR~rE-v~efie~~l~~~~l~r 212 (435)
T PRK07721 137 REKMEVGVRAIDSLL--TVGKGQRVGIFAGSGVGKSTLMGMIARQTS-ADLNVIALIGERGRE-VREFIERDLGEEGLKR 212 (435)
T ss_pred CCCCCCCCEEECCCC--CCCCCCEEEECCCCCCCHHHHHHHHHHHHC-CCEEEEEEECCCHHH-HHHHHHHHHCCCCCCC
T ss_conf 863037856522647--603575410026899878999999988744-882589993320289-9999997522155532
Q ss_pred CHHEECCCC---HH---------HHHHHHHHCCCCCEEEECHHHHHH
Q ss_conf 100003478---89---------999999731698289972168766
Q gi|254780334|r 146 SVYIAIETN---VE---------DIIATLITNEKPDLVIIDSIQTLW 180 (479)
Q Consensus 146 ~i~~~~e~~---l~---------~il~~~i~~~~~~~vVIDSIQtl~ 180 (479)
T Consensus 213 svvv~atsd~p~~~R~~a~~~a~tiAEyfrd~G~~VLl~~Dsltr~A 259 (435)
T PRK07721 213 SIVVVATSDQPALMRIKGAYTATAIAEYFRDKGQNVMLMMDSVTRVA 259 (435)
T ss_pred EEEEEECCCCCHHHHHHHHHHHHHHHHHHHHCCCCEEEECCCHHHHH
T ss_conf 39999438899999999999988899999967997899516388999