HHsearch alignment for GI: 254780334 and conserved domain: PRK08116

Probab=98.15  E-value=3.4e-05  Score=57.47  Aligned_cols=134  Identities=22%  Similarity=0.329  Sum_probs=82.0

Q ss_pred             CCCEEEEECCCCCCHHHHHHHHHHHHHCCCCCEEEEECCCCHHHHHHHHHHCCCCCCCHHEECCCCHHHHHHHHHHCCCC
Q ss_conf             87089995498751889999999998503981999986463047888875201577510000347889999999731698
Q gi|254780334|r   89 RGSVILVGGDPGIGKSTLLMQTAASLAYKKHRITYVSGEEAIGQIRLRAQRLNTINSSVYIAIETNVEDIIATLITNEKP  168 (479)
Q Consensus        89 ~Gs~~Li~G~PGvGKSTL~Lqia~~~a~~g~~vlYvS~EEs~~Qi~~Ra~Rl~~~~~~i~~~~e~~l~~il~~~i~~~~~  168 (479)
T Consensus       107 ~~~GLll~G~~GtGKThLa~aIa~~l~~~g~~V~~~~~~~ll~~lk~~~~~~----------~~~~~~e~l~~l---~~~  173 (262)
T PRK08116        107 ESVGLLLWGSPGNGKTYLAAAIANELIEKGVPVVFVNVPELLNRIKSTYNSE----------GKEDENEIIRAL---DNA  173 (262)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHHHHHHCCCEEEEEEHHHHHHHHHHHHHCC----------CCHHHHHHHHHH---HCC
T ss_conf             6861899898999899999999999998799399988999999999998635----------610199999986---129


Q ss_pred             CEEEECHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEEEECCCC--CCCCHHHHHHHHH--EEEEEECCC
Q ss_conf             289972168766542044556367999999999997530797899986303665--4331145787753--027851555
Q gi|254780334|r  169 DLVIIDSIQTLWSQTAESSPGTVIQVRTSVQAMIQYAKKNGVAMVLVGHVTKEG--QIAGPRVIEHMVD--AVLYFEGGT  244 (479)
Q Consensus       169 ~~vVIDSIQtl~~~~~~s~~GsvsQvre~~~~L~~~AK~~~i~vilighvTK~G--~iAGp~~LeH~VD--~vl~~ege~  244 (479)
T Consensus       174 dLLIiDDlG~e~~t~w---------~~e~lf~IIn~Ry~~~kptIiTTNl~~~eL~~~~~~Ri~sRl~e~~~~v~~~G~d  244 (262)
T PRK08116        174 DLLILDDLGAEKDTEW---------VREKLYNIIDSRYRKGLPTIFTTNLSLEELKNQYGKRTYSRILEMCTPVKNEGKS  244 (262)
T ss_pred             CEEEEEHHCCCCCCHH---------HHHHHHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHHHHHHCCEEEEEECCC
T ss_conf             9899832214569878---------9999999999999769998998799999999986379999998677899851778