HHsearch alignment for GI: 254780334 and conserved domain: PRK08760
>PRK08760 replicative DNA helicase; Provisional.
Probab=99.91 E-value=1.4e-22 Score=184.21 Aligned_cols=200 Identities=18% Similarity=0.249 Sum_probs=145.6
Q ss_pred CCCCCCCCCHHHHHHHCCCCCCCCEEEEECCCCCCHHHHHHHHHHHHH-CCCCCEEEEECCCCHHHHHHHHH--HCCCC-
Q ss_conf 666323781248888659857870899954987518899999999985-03981999986463047888875--20157-
Q gi|254780334|r 68 EESRIQTHIDELDRVTGGGFVRGSVILVGGDPGIGKSTLLMQTAASLA-YKKHRITYVSGEEAIGQIRLRAQ--RLNTI- 143 (479)
Q Consensus 68 ~~~Ri~TGi~eLDrvLGGGl~~Gs~~Li~G~PGvGKSTL~Lqia~~~a-~~g~~vlYvS~EEs~~Qi~~Ra~--Rl~~~- 143 (479)
T Consensus 208 ~~~Gi~TG~~~LD~~t-~Gl~~G~LiViaaRPsmGKTalalnia~~~A~~~~~~V~~fSLEMs~~ql~~Rlls~~s~v~~ 286 (476)
T PRK08760 208 NITGLPTGYNDFDAMT-AGLQPTDLIILAARPAMGKTTFALNIAEYAAIKSKKGVAVFSMEMSASQLAMRLISSNGRINA 286 (476)
T ss_pred CCEECCCCCHHHHHHH-CCCCCCCEEEEEECCCCCHHHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHCCCCH
T ss_conf 9533677968899744-699877779998778874789999999999983799789970369999999999998338976
Q ss_pred ------------------------CCCHHEECC--CCHHHH---HHHHHHCCCCCEEEECHHHHHHHHHHCCCCCCHHHH
Q ss_conf ------------------------751000034--788999---999973169828997216876654204455636799
Q gi|254780334|r 144 ------------------------NSSVYIAIE--TNVEDI---IATLITNEKPDLVIIDSIQTLWSQTAESSPGTVIQV 194 (479)
Q Consensus 144 ------------------------~~~i~~~~e--~~l~~i---l~~~i~~~~~~~vVIDSIQtl~~~~~~s~~GsvsQv 194 (479)
T Consensus 287 ~~i~~g~l~~~e~~~~~~a~~~l~~~~l~idD~~~~t~~~ir~~~R~~k~~~~l~lvvIDYLqL~~~~~~--~~~r~~~v 364 (476)
T PRK08760 287 QRLRTGALEDEDWARVTGAIKMLKETKIFIDDTPGVSPEVLRSKCRRLKREHDLGLIVIDYLQLMSVPGN--SENRATEI 364 (476)
T ss_pred HHHHCCCCCHHHHHHHHHHHHHHHHCCCEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEEHHHHCCCCCC--CCCHHHHH
T ss_conf 7776489999999999999999860881685799999999999999998727998799970764158888--74488999
Q ss_pred HHHHHHHHHHHHHCCCEEEEEEEECCCC-----------CCCCHHHHHHHHHEEEEEECCC-C----CCCCCCEEEEEEE
Q ss_conf 9999999997530797899986303665-----------4331145787753027851555-6----6654421567632
Q gi|254780334|r 195 RTSVQAMIQYAKKNGVAMVLVGHVTKEG-----------QIAGPRVIEHMVDAVLYFEGGT-R----NTQYDYRILRSVK 258 (479)
Q Consensus 195 re~~~~L~~~AK~~~i~vilighvTK~G-----------~iAGp~~LeH~VD~vl~~ege~-~----~~~~~~R~Lr~~K 258 (479)
T Consensus 365 ~~isr~lK~lAkel~vpVi~LsQLnR~~e~R~dkrP~lsDLReSG~IEqdADvV~~l~R~~~y~~~~~~~~~~~e~ivaK 444 (476)
T PRK08760 365 SEISRSLKGLAKELNVPVIALSQLNRSLETRTDKRPVMADLRESGAIEQDADMIVFIYRDDYYNKENSPDKGLAEIIIGK 444 (476)
T ss_pred HHHHHHHHHHHHHHCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCHHHCCCEEEEECCHHHCCCCCCCCCCEEEEEEEC
T ss_conf 99999999999997997899631576634479999860011254420320868999624532387679888807999974
Q ss_pred ECCCCCCCEEEE
Q ss_conf 025676512799
Q gi|254780334|r 259 NRFGPTDEIGVF 270 (479)
Q Consensus 259 NRfG~t~e~gvf 270 (479)
T Consensus 445 nR~G~~G~v~l~ 456 (476)
T PRK08760 445 HRGGPTGSCKLK 456 (476)
T ss_pred CCCCCCCEEEEE
T ss_conf 678986269999