HHsearch alignment for GI: 254780334 and conserved domain: PRK08840
>PRK08840 replicative DNA helicase; Provisional.
Probab=99.91 E-value=7.5e-23 Score=186.28 Aligned_cols=199 Identities=16% Similarity=0.278 Sum_probs=145.3
Q ss_pred CCCCCCCCHHHHHHHCCCCCCCCEEEEECCCCCCHHHHHHHHHHHHH-CCCCCEEEEECCCCHHHHHHHHH---------
Q ss_conf 66323781248888659857870899954987518899999999985-03981999986463047888875---------
Q gi|254780334|r 69 ESRIQTHIDELDRVTGGGFVRGSVILVGGDPGIGKSTLLMQTAASLA-YKKHRITYVSGEEAIGQIRLRAQ--------- 138 (479)
Q Consensus 69 ~~Ri~TGi~eLDrvLGGGl~~Gs~~Li~G~PGvGKSTL~Lqia~~~a-~~g~~vlYvS~EEs~~Qi~~Ra~--------- 138 (479)
T Consensus 197 ~~Gi~TG~~~LD~~~-~Gl~~G~LiviaaRPsmGKTalalnia~n~a~~~~~~v~~fSlEMs~~ql~~Rlls~~s~i~~~ 275 (464)
T PRK08840 197 VTGVSTGFTDLNKKT-AGLQGSDLIIVAARPSMGKTTFAMNLCENAAMDQDKPVLIFSLEMPAEQLMMRMLASLSRVDQT 275 (464)
T ss_pred CCCCCCCHHHHHHHC-CCCCCCCEEEEEECCCCCHHHHHHHHHHHHHHHCCCCEEEECCCCCHHHHHHHHHHHHCCCCCC
T ss_conf 736888989998753-6987576799983798736899999999999965996799767799899999999985389820
Q ss_pred -------------HC----CC--CCCCHHEECCC--CHHHHH---HHHHHCC-CCCEEEECHHHHHHHHHHCCCCCCHHH
Q ss_conf -------------20----15--77510000347--889999---9997316-982899721687665420445563679
Q gi|254780334|r 139 -------------RL----NT--INSSVYIAIET--NVEDII---ATLITNE-KPDLVIIDSIQTLWSQTAESSPGTVIQ 193 (479)
Q Consensus 139 -------------Rl----~~--~~~~i~~~~e~--~l~~il---~~~i~~~-~~~~vVIDSIQtl~~~~~~s~~GsvsQ 193 (479)
T Consensus 276 ~ir~g~l~~~e~~~i~~a~~~~~~~~~l~idd~~~~t~~~i~a~~r~~~~~~~~l~lvvIDYLqL~~~~~~~--~~r~~~ 353 (464)
T PRK08840 276 KIRTGQLDDEDWARISSTMGILMEKKNMYIDDSSGLTPTEVRSRARRVAREHGGLSMIMVDYLQLMRVPALQ--DNRTLE 353 (464)
T ss_pred HHHCCCCCHHHHHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHHHHHHCCCCCEEEEEHHHHCCCCCCC--CHHHHH
T ss_conf 111488899999999999999984799588569987579999999999986489878996188660678864--036789
Q ss_pred HHHHHHHHHHHHHHCCCEEEEEEEECCC-----------CCCCCHHHHHHHHHEEEEEECCC-C---CCCCCCEEEEEEE
Q ss_conf 9999999999753079789998630366-----------54331145787753027851555-6---6654421567632
Q gi|254780334|r 194 VRTSVQAMIQYAKKNGVAMVLVGHVTKE-----------GQIAGPRVIEHMVDAVLYFEGGT-R---NTQYDYRILRSVK 258 (479)
Q Consensus 194 vre~~~~L~~~AK~~~i~vilighvTK~-----------G~iAGp~~LeH~VD~vl~~ege~-~---~~~~~~R~Lr~~K 258 (479)
T Consensus 354 i~~isr~lK~lAkel~vpVv~lsQLnR~~e~r~dkrP~lsDLReSG~IEqdAD~V~~l~R~~~y~~~~~~~~~~elivaK 433 (464)
T PRK08840 354 IAEISRSLKALAKELNVPVVALSQLNRSLEQRADKRPVNSDLRESGSIEQDADLIMFIYRDEVYNPDSPLKGTAEIIIGK 433 (464)
T ss_pred HHHHHHHHHHHHHHHCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCHHHHCCEEEEECCHHHCCCCCCCCCEEEEEEEC
T ss_conf 99999999999999699899963168531116999987350125441054386899964431048988878806999972
Q ss_pred ECCCCCCCEEEE
Q ss_conf 025676512799
Q gi|254780334|r 259 NRFGPTDEIGVF 270 (479)
Q Consensus 259 NRfG~t~e~gvf 270 (479)
T Consensus 434 nR~G~~G~v~l~ 445 (464)
T PRK08840 434 QRNGPIGSVRLT 445 (464)
T ss_pred CCCCCCEEEEEE
T ss_conf 688986069999