HHsearch alignment for GI: 254780334 and conserved domain: PRK09302
>PRK09302 circadian clock protein KaiC; Reviewed.
Probab=99.97 E-value=1.2e-28 Score=228.57 Aligned_cols=206 Identities=27% Similarity=0.385 Sum_probs=159.9
Q ss_pred CCCCCCCCCCHHHHHHHCCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHCCCCCEEEEECCCCHHHHHHHHHHCCCCCCC
Q ss_conf 56663237812488886598578708999549875188999999999850398199998646304788887520157751
Q gi|254780334|r 67 EEESRIQTHIDELDRVTGGGFVRGSVILVGGDPGIGKSTLLMQTAASLAYKKHRITYVSGEEAIGQIRLRAQRLNTINSS 146 (479)
Q Consensus 67 ~~~~Ri~TGi~eLDrvLGGGl~~Gs~~Li~G~PGvGKSTL~Lqia~~~a~~g~~vlYvS~EEs~~Qi~~Ra~Rl~~~~~~ 146 (479)
T Consensus 243 ~~~~rv~tGi~~LD~llgGGl~~GsstLi~Gp~GtGKTtla~qFl~~~a~~GE~~l~~~FeE~~~~l~~~a~~~G~dl~~ 322 (501)
T PRK09302 243 SSNERISSGVPDLDEMCGGGFFRGSIILVSGATGTGKTLLVSKFAEAACRRGERCLLFAFEESRAQLVRNATSWGIDLEE 322 (501)
T ss_pred CCCCCCCCCCHHHHHHHCCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEEEECCHHHHHHHHHHCCCCHHH
T ss_conf 65200047973278872599758946999889998889999999999986599089999967999999999973998488
Q ss_pred ------HHE----ECCCCHHHH---HHHHHHCCCCCEEEECHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCCCEEE
Q ss_conf ------000----034788999---9999731698289972168766542044556367999999999997530797899
Q gi|254780334|r 147 ------VYI----AIETNVEDI---IATLITNEKPDLVIIDSIQTLWSQTAESSPGTVIQVRTSVQAMIQYAKKNGVAMV 213 (479)
Q Consensus 147 ------i~~----~~e~~l~~i---l~~~i~~~~~~~vVIDSIQtl~~~~~~s~~GsvsQvre~~~~L~~~AK~~~i~vi 213 (479)
T Consensus 323 ~~~~G~l~i~~~~p~~~~~~e~~~~i~~~v~~~~~~rVvIDsls~~~~~------~~~~~~r~~l~~L~~~Lk~~gvT~l 396 (501)
T PRK09302 323 MERKGLLKIICARPESTGLEDHLQIIKREIEEFKPSRVAVDPLSALARG------GSLNEFRQFVIRLTDYLKQEEITGL 396 (501)
T ss_pred HHHCCCEEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEECCHHHHHHH------CCHHHHHHHHHHHHHHHHHCCCEEE
T ss_conf 8748947999837000598999999999999729989999580687652------6859999999999999976897899
Q ss_pred EEEEECC--CCCCCCHHHHHHHHHEEE---EEECCCCCCCCCCEEEEEEEECCCCCCCEE--EEEECCCCCEEECCHH
Q ss_conf 9863036--654331145787753027---851555666544215676320256765127--9985156631101404
Q gi|254780334|r 214 LVGHVTK--EGQIAGPRVIEHMVDAVL---YFEGGTRNTQYDYRILRSVKNRFGPTDEIG--VFEMSDKGLQEVSDPS 284 (479)
Q Consensus 214 lighvTK--~G~iAGp~~LeH~VD~vl---~~ege~~~~~~~~R~Lr~~KNRfG~t~e~g--vf~m~~~Gl~~v~~ps 284 (479)
T Consensus 397 ~t~~~~~~~g~~~~t~~~iS~l~D~ii~Lry~E~----~g~l~R~i~VlK~R-~s~h~~~iRe~~It~~Gi~-vg~p~ 468 (501)
T PRK09302 397 FTNLTPDFMGSHSITESHISSLTDTWILLQYVEI----NGEMNRALNVLKMR-GSWHSKQIREFVITDKGIH-IKDPF 468 (501)
T ss_pred EEEECCCCCCCCCCCCCCHHHHCCEEEEEEEEEE----CCEEEEEEEEEEEC-CCCCCCCEEEEEECCCCEE-ECCCC
T ss_conf 9761235567664476660011124789998713----89998989999936-8965775378998799679-74314