HHsearch alignment for GI: 254780334 and conserved domain: PRK09302

>PRK09302 circadian clock protein KaiC; Reviewed.
Probab=99.97  E-value=1.2e-28  Score=228.57  Aligned_cols=206  Identities=27%  Similarity=0.385  Sum_probs=159.9

Q ss_pred             CCCCCCCCCCHHHHHHHCCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHCCCCCEEEEECCCCHHHHHHHHHHCCCCCCC
Q ss_conf             56663237812488886598578708999549875188999999999850398199998646304788887520157751
Q gi|254780334|r   67 EEESRIQTHIDELDRVTGGGFVRGSVILVGGDPGIGKSTLLMQTAASLAYKKHRITYVSGEEAIGQIRLRAQRLNTINSS  146 (479)
Q Consensus        67 ~~~~Ri~TGi~eLDrvLGGGl~~Gs~~Li~G~PGvGKSTL~Lqia~~~a~~g~~vlYvS~EEs~~Qi~~Ra~Rl~~~~~~  146 (479)
T Consensus       243 ~~~~rv~tGi~~LD~llgGGl~~GsstLi~Gp~GtGKTtla~qFl~~~a~~GE~~l~~~FeE~~~~l~~~a~~~G~dl~~  322 (501)
T PRK09302        243 SSNERISSGVPDLDEMCGGGFFRGSIILVSGATGTGKTLLVSKFAEAACRRGERCLLFAFEESRAQLVRNATSWGIDLEE  322 (501)
T ss_pred             CCCCCCCCCCHHHHHHHCCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEEEECCHHHHHHHHHHCCCCHHH
T ss_conf             65200047973278872599758946999889998889999999999986599089999967999999999973998488


Q ss_pred             ------HHE----ECCCCHHHH---HHHHHHCCCCCEEEECHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCCCEEE
Q ss_conf             ------000----034788999---9999731698289972168766542044556367999999999997530797899
Q gi|254780334|r  147 ------VYI----AIETNVEDI---IATLITNEKPDLVIIDSIQTLWSQTAESSPGTVIQVRTSVQAMIQYAKKNGVAMV  213 (479)
Q Consensus       147 ------i~~----~~e~~l~~i---l~~~i~~~~~~~vVIDSIQtl~~~~~~s~~GsvsQvre~~~~L~~~AK~~~i~vi  213 (479)
T Consensus       323 ~~~~G~l~i~~~~p~~~~~~e~~~~i~~~v~~~~~~rVvIDsls~~~~~------~~~~~~r~~l~~L~~~Lk~~gvT~l  396 (501)
T PRK09302        323 MERKGLLKIICARPESTGLEDHLQIIKREIEEFKPSRVAVDPLSALARG------GSLNEFRQFVIRLTDYLKQEEITGL  396 (501)
T ss_pred             HHHCCCEEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEECCHHHHHHH------CCHHHHHHHHHHHHHHHHHCCCEEE
T ss_conf             8748947999837000598999999999999729989999580687652------6859999999999999976897899


Q ss_pred             EEEEECC--CCCCCCHHHHHHHHHEEE---EEECCCCCCCCCCEEEEEEEECCCCCCCEE--EEEECCCCCEEECCHH
Q ss_conf             9863036--654331145787753027---851555666544215676320256765127--9985156631101404
Q gi|254780334|r  214 LVGHVTK--EGQIAGPRVIEHMVDAVL---YFEGGTRNTQYDYRILRSVKNRFGPTDEIG--VFEMSDKGLQEVSDPS  284 (479)
Q Consensus       214 lighvTK--~G~iAGp~~LeH~VD~vl---~~ege~~~~~~~~R~Lr~~KNRfG~t~e~g--vf~m~~~Gl~~v~~ps  284 (479)
T Consensus       397 ~t~~~~~~~g~~~~t~~~iS~l~D~ii~Lry~E~----~g~l~R~i~VlK~R-~s~h~~~iRe~~It~~Gi~-vg~p~  468 (501)
T PRK09302        397 FTNLTPDFMGSHSITESHISSLTDTWILLQYVEI----NGEMNRALNVLKMR-GSWHSKQIREFVITDKGIH-IKDPF  468 (501)
T ss_pred             EEEECCCCCCCCCCCCCCHHHHCCEEEEEEEEEE----CCEEEEEEEEEEEC-CCCCCCCEEEEEECCCCEE-ECCCC
T ss_conf             9761235567664476660011124789998713----89998989999936-8965775378998799679-74314