HHsearch alignment for GI: 254780334 and conserved domain: PRK09354
>PRK09354 recA recombinase A; Provisional.
Probab=99.88 E-value=1.6e-20 Score=169.23 Aligned_cols=225 Identities=21% Similarity=0.335 Sum_probs=165.1
Q ss_pred CCCCCEECCCCCCCCCCCCCCCCHHHHHHHC-CCCCCCCEEEEECCCCCCHHHHHHHHHHHHHCCCCCEEEEECCCCHHH
Q ss_conf 6656403133345566632378124888865-985787089995498751889999999998503981999986463047
Q gi|254780334|r 54 HSISLFMLSEESIEEESRIQTHIDELDRVTG-GGFVRGSVILVGGDPGIGKSTLLMQTAASLAYKKHRITYVSGEEAIGQ 132 (479)
Q Consensus 54 ~~~~~~~l~~~~~~~~~Ri~TGi~eLDrvLG-GGl~~Gs~~Li~G~PGvGKSTL~Lqia~~~a~~g~~vlYvS~EEs~~Q 132 (479)
T Consensus 23 g~g~im~l~~~~~~~v~~isTGsl~LD~aLGiGG~P~GRivEi~G~esSGKTtlal~~iaeaQk~Gg~~a~iDaE~ald- 101 (350)
T PRK09354 23 GKGSIMRLGDDESMDVETISTGSLALDIALGIGGLPKGRIVEIYGPESSGKTTLALHAIAEAQKAGGTAAFIDAEHALD- 101 (350)
T ss_pred CCCCEEECCCCCCCCCCEECCCCHHHHHHHCCCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEEECCCCC-
T ss_conf 9874477788888776654477178999875899678708999889877799999999999997599479996000279-
Q ss_pred HHHHHHHCCCCCCCHHEECCCCHHH---HHHHHHHCCCCCEEEECHHHHHHH-HHHCCCCCC--H-HHHHHHHHHHHH--
Q ss_conf 8888752015775100003478899---999997316982899721687665-420445563--6-799999999999--
Q gi|254780334|r 133 IRLRAQRLNTINSSVYIAIETNVED---IIATLITNEKPDLVIIDSIQTLWS-QTAESSPGT--V-IQVRTSVQAMIQ-- 203 (479)
Q Consensus 133 i~~Ra~Rl~~~~~~i~~~~e~~l~~---il~~~i~~~~~~~vVIDSIQtl~~-~~~~s~~Gs--v-sQvre~~~~L~~-- 203 (479)
T Consensus 102 -~~~a~~lGVd~d~llv~qpd~~Eqal~i~e~Lvrsg~vd~IVvDSVaAL~pk~Eieg~mgd~~vG~qARlmSqalRKlt 180 (350)
T PRK09354 102 -PVYAKKLGVDIDNLLVSQPDTGEQALEIADALVRSGAVDLIVVDSVAALVPKAEIEGEMGDSHVGLQARLMSQALRKLT 180 (350)
T ss_pred -HHHHHHCCCCHHHEEEECCCHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHCCCCCCCHHHHHHHHHHHHHHHH
T ss_conf -8899984977157178568679999999999985488418998253345768887313354226389999999999999
Q ss_pred -HHHHCCCEEEEEEEE-CCCCCCC-------CHHHHHHHHHEEEEEECCC--CCCC--CCCE-EEEEEEECCCCCCCEEE
Q ss_conf -753079789998630-3665433-------1145787753027851555--6665--4421-56763202567651279
Q gi|254780334|r 204 -YAKKNGVAMVLVGHV-TKEGQIA-------GPRVIEHMVDAVLYFEGGT--RNTQ--YDYR-ILRSVKNRFGPTDEIGV 269 (479)
Q Consensus 204 -~AK~~~i~vilighv-TK~G~iA-------Gp~~LeH~VD~vl~~ege~--~~~~--~~~R-~Lr~~KNRfG~t~e~gv 269 (479)
T Consensus 181 ~~i~ks~t~~IfINQlR~kiGvmfG~petT~GG~ALkFyaSvRl~irr~~~iK~g~~~iG~~ikvkvvKNK~apPfk~ae 260 (350)
T PRK09354 181 GNINKSNTTVIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRIGTIKDGDEVIGNRTKVKVVKNKVAPPFKQAE 260 (350)
T ss_pred HHHHCCCCEEEEEEEEHHHCCCCCCCCCCCCCCCCCCCCEEEEEEECCCCCCCCCCEEEEEEEEEEEEECCCCCCCCEEE
T ss_conf 99855782899974323214660689877776330012122888412356313588358889999998568689975699
Q ss_pred EEEC-CCCCEEE
Q ss_conf 9851-5663110
Q gi|254780334|r 270 FEMS-DKGLQEV 280 (479)
Q Consensus 270 f~m~-~~Gl~~v 280 (479)
T Consensus 261 ~dI~yg~GI~~~ 272 (350)
T PRK09354 261 FDIMYGEGISRE 272 (350)
T ss_pred EEEECCCCCCCH
T ss_conf 998717766725