HHsearch alignment for GI: 254780334 and conserved domain: PRK09354

>PRK09354 recA recombinase A; Provisional.
Probab=99.88  E-value=1.6e-20  Score=169.23  Aligned_cols=225  Identities=21%  Similarity=0.335  Sum_probs=165.1

Q ss_pred             CCCCCEECCCCCCCCCCCCCCCCHHHHHHHC-CCCCCCCEEEEECCCCCCHHHHHHHHHHHHHCCCCCEEEEECCCCHHH
Q ss_conf             6656403133345566632378124888865-985787089995498751889999999998503981999986463047
Q gi|254780334|r   54 HSISLFMLSEESIEEESRIQTHIDELDRVTG-GGFVRGSVILVGGDPGIGKSTLLMQTAASLAYKKHRITYVSGEEAIGQ  132 (479)
Q Consensus        54 ~~~~~~~l~~~~~~~~~Ri~TGi~eLDrvLG-GGl~~Gs~~Li~G~PGvGKSTL~Lqia~~~a~~g~~vlYvS~EEs~~Q  132 (479)
T Consensus        23 g~g~im~l~~~~~~~v~~isTGsl~LD~aLGiGG~P~GRivEi~G~esSGKTtlal~~iaeaQk~Gg~~a~iDaE~ald-  101 (350)
T PRK09354         23 GKGSIMRLGDDESMDVETISTGSLALDIALGIGGLPKGRIVEIYGPESSGKTTLALHAIAEAQKAGGTAAFIDAEHALD-  101 (350)
T ss_pred             CCCCEEECCCCCCCCCCEECCCCHHHHHHHCCCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEEECCCCC-
T ss_conf             9874477788888776654477178999875899678708999889877799999999999997599479996000279-


Q ss_pred             HHHHHHHCCCCCCCHHEECCCCHHH---HHHHHHHCCCCCEEEECHHHHHHH-HHHCCCCCC--H-HHHHHHHHHHHH--
Q ss_conf             8888752015775100003478899---999997316982899721687665-420445563--6-799999999999--
Q gi|254780334|r  133 IRLRAQRLNTINSSVYIAIETNVED---IIATLITNEKPDLVIIDSIQTLWS-QTAESSPGT--V-IQVRTSVQAMIQ--  203 (479)
Q Consensus       133 i~~Ra~Rl~~~~~~i~~~~e~~l~~---il~~~i~~~~~~~vVIDSIQtl~~-~~~~s~~Gs--v-sQvre~~~~L~~--  203 (479)
T Consensus       102 -~~~a~~lGVd~d~llv~qpd~~Eqal~i~e~Lvrsg~vd~IVvDSVaAL~pk~Eieg~mgd~~vG~qARlmSqalRKlt  180 (350)
T PRK09354        102 -PVYAKKLGVDIDNLLVSQPDTGEQALEIADALVRSGAVDLIVVDSVAALVPKAEIEGEMGDSHVGLQARLMSQALRKLT  180 (350)
T ss_pred             -HHHHHHCCCCHHHEEEECCCHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHCCCCCCCHHHHHHHHHHHHHHHH
T ss_conf             -8899984977157178568679999999999985488418998253345768887313354226389999999999999


Q ss_pred             -HHHHCCCEEEEEEEE-CCCCCCC-------CHHHHHHHHHEEEEEECCC--CCCC--CCCE-EEEEEEECCCCCCCEEE
Q ss_conf             -753079789998630-3665433-------1145787753027851555--6665--4421-56763202567651279
Q gi|254780334|r  204 -YAKKNGVAMVLVGHV-TKEGQIA-------GPRVIEHMVDAVLYFEGGT--RNTQ--YDYR-ILRSVKNRFGPTDEIGV  269 (479)
Q Consensus       204 -~AK~~~i~vilighv-TK~G~iA-------Gp~~LeH~VD~vl~~ege~--~~~~--~~~R-~Lr~~KNRfG~t~e~gv  269 (479)
T Consensus       181 ~~i~ks~t~~IfINQlR~kiGvmfG~petT~GG~ALkFyaSvRl~irr~~~iK~g~~~iG~~ikvkvvKNK~apPfk~ae  260 (350)
T PRK09354        181 GNINKSNTTVIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRIGTIKDGDEVIGNRTKVKVVKNKVAPPFKQAE  260 (350)
T ss_pred             HHHHCCCCEEEEEEEEHHHCCCCCCCCCCCCCCCCCCCCEEEEEEECCCCCCCCCCEEEEEEEEEEEEECCCCCCCCEEE
T ss_conf             99855782899974323214660689877776330012122888412356313588358889999998568689975699


Q ss_pred             EEEC-CCCCEEE
Q ss_conf             9851-5663110
Q gi|254780334|r  270 FEMS-DKGLQEV  280 (479)
Q Consensus       270 f~m~-~~Gl~~v  280 (479)
T Consensus       261 ~dI~yg~GI~~~  272 (350)
T PRK09354        261 FDIMYGEGISRE  272 (350)
T ss_pred             EEEECCCCCCCH
T ss_conf             998717766725