HHsearch alignment for GI: 254780334 and conserved domain: PRK09473
>PRK09473 oppD oligopeptide transporter ATP-binding component; Provisional.
Probab=97.73 E-value=0.00044 Score=49.34 Aligned_cols=138 Identities=20% Similarity=0.282 Sum_probs=77.4
Q ss_pred CCCCCCEEEEECCCCCCHHHHHHHHHHHHHCCC--CCEEEEECCC----CHHHH-HHHHHHCCCCCCCHH----------
Q ss_conf 857870899954987518899999999985039--8199998646----30478-888752015775100----------
Q gi|254780334|r 86 GFVRGSVILVGGDPGIGKSTLLMQTAASLAYKK--HRITYVSGEE----AIGQI-RLRAQRLNTINSSVY---------- 148 (479)
Q Consensus 86 Gl~~Gs~~Li~G~PGvGKSTL~Lqia~~~a~~g--~~vlYvS~EE----s~~Qi-~~Ra~Rl~~~~~~i~---------- 148 (479)
T Consensus 38 ~i~~GEilgivGeSGsGKSTl~~~i~gll~~~~~~sG~I~~~G~~i~~~~~~~~~~~r~~~I~~vfQdp~~sLnP~~~i~ 117 (330)
T PRK09473 38 SLRAGETLGIVGESGSGKSQTAFALMGLLAANGRIGGSATFNGREILNLPEKELNKLRAEQISMIFQDPMTSLNPYMRVG 117 (330)
T ss_pred EECCCCEEEEECCCCCHHHHHHHHHHCCCCCCCCEEEEEEECCEECCCCCHHHHHHHHCCCEEEEEECCCHHCCCCCCHH
T ss_conf 88899899998689877999999997688888833589999999866589999998630667999607501138410456
Q ss_pred --------EECC----------------CCH---HH-----------------HHHHHHHCCCCCEEEECHHHHHHHHHH
Q ss_conf --------0034----------------788---99-----------------999997316982899721687665420
Q gi|254780334|r 149 --------IAIE----------------TNV---ED-----------------IIATLITNEKPDLVIIDSIQTLWSQTA 184 (479)
Q Consensus 149 --------~~~e----------------~~l---~~-----------------il~~~i~~~~~~~vVIDSIQtl~~~~~ 184 (479)
T Consensus 118 ~~l~e~l~~~~~~~~~~~~~~~~~lL~~v~l~~~~~~l~~yP~eLSGGq~QRV~IAr-AL~~~P~lLI~DEPTsaLD--- 193 (330)
T PRK09473 118 EQLMEVLMLHKGMSKAEAFEESVRMLDAVKMPEARKRMKMYPHEFSGGMRQRVMIAM-ALLCRPKLLIADEPTTALD--- 193 (330)
T ss_pred HHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCHHHHHHHCCHHHCCHHHHHHHHHHH-HHHCCCCEEEECCCCCCCC---
T ss_conf 655578988538998999999998888760721788873481533988999999999-9970999999738755479---
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEEEECCCCCCCCHHHHHHHHHEEEEEE
Q ss_conf 445563679999999999975307978999863036654331145787753027851
Q gi|254780334|r 185 ESSPGTVIQVRTSVQAMIQYAKKNGVAMVLVGHVTKEGQIAGPRVIEHMVDAVLYFE 241 (479)
Q Consensus 185 ~s~~GsvsQvre~~~~L~~~AK~~~i~vilighvTK~G~iAGp~~LeH~VD~vl~~e 241 (479)
T Consensus 194 ------v~~q~~Il~ll~~l~~e~g~til~ITH--------Dl~~v~~~~DrI~VMy 236 (330)
T PRK09473 194 ------VTVQAQIMTLLNELKREFNTAIIMITH--------DLGVVAGICDKVLVMY 236 (330)
T ss_pred ------HHHHHHHHHHHHHHHHHCCCCEEEECC--------CHHHHHHHCCEEEEEE
T ss_conf ------999999999999999974994799828--------8999998699899998