HHsearch alignment for GI: 254780334 and conserved domain: PRK11022
>PRK11022 dppD dipeptide transporter ATP-binding subunit; Provisional.
Probab=97.47 E-value=0.002 Score=44.53 Aligned_cols=137 Identities=18% Similarity=0.319 Sum_probs=74.0
Q ss_pred CCCCCCEEEEECCCCCCHHHHHHHHHHHHHCCC----CCEEEEECCC----CHHHH-HHHHHHCCCCCCC-H--------
Q ss_conf 857870899954987518899999999985039----8199998646----30478-8887520157751-0--------
Q gi|254780334|r 86 GFVRGSVILVGGDPGIGKSTLLMQTAASLAYKK----HRITYVSGEE----AIGQI-RLRAQRLNTINSS-V-------- 147 (479)
Q Consensus 86 Gl~~Gs~~Li~G~PGvGKSTL~Lqia~~~a~~g----~~vlYvS~EE----s~~Qi-~~Ra~Rl~~~~~~-i-------- 147 (479)
T Consensus 29 ~i~~GEilgivGeSGsGKSTl~~~ilgll~~~~~~~~g~i~-~~g~dl~~~~~~~~~~~~g~~i~~vfQdp~~sLnP~~t 107 (327)
T PRK11022 29 SVKQGEVVGIVGESGSGKSVSSLAIMGLIDYPGRVMAEKLE-FNGQDLQRISEKERRNLVGAEVAMIFQDPMTSLNPCYT 107 (327)
T ss_pred EECCCCEEEEECCCCCHHHHHHHHHHCCCCCCCCEEEEEEE-ECCEECCCCCHHHHHHHHCCCEEEEECCCHHHCCHHHH
T ss_conf 98899999999999878999999997488989976542799-99999774999999986377669996085132074555
Q ss_pred -------------------------HEECCCCH---HH-----------------HHHHHHHCCCCCEEEECHHHHHHHH
Q ss_conf -------------------------00034788---99-----------------9999973169828997216876654
Q gi|254780334|r 148 -------------------------YIAIETNV---ED-----------------IIATLITNEKPDLVIIDSIQTLWSQ 182 (479)
Q Consensus 148 -------------------------~~~~e~~l---~~-----------------il~~~i~~~~~~~vVIDSIQtl~~~ 182 (479)
T Consensus 108 v~~~i~e~l~~~~~~~~~~~~~r~~elL~~vgl~~~~~~l~~yP~eLSGGq~QRV~IArA-L~~~P~lLIaDEPTsaLD- 185 (327)
T PRK11022 108 VGFQIMEAIKVHQGGNKKTRRQRAIDLLNQVGIPDPASRLDVYPHQLSGGMSQRVMIAMA-IACRPKLLIADEPTTALD- 185 (327)
T ss_pred HHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCHHHHHHCCHHHCCHHHHHHHHHHHH-HHHCCCEEEECCCCCCCC-
T ss_conf 557677788875278889999999999987158568889742855469999999999999-970999999838876579-
Q ss_pred HHCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEEEECCCCCCCCHHHHHHHHHEEEEEE
Q ss_conf 20445563679999999999975307978999863036654331145787753027851
Q gi|254780334|r 183 TAESSPGTVIQVRTSVQAMIQYAKKNGVAMVLVGHVTKEGQIAGPRVIEHMVDAVLYFE 241 (479)
Q Consensus 183 ~~~s~~GsvsQvre~~~~L~~~AK~~~i~vilighvTK~G~iAGp~~LeH~VD~vl~~e 241 (479)
T Consensus 186 --------~~~q~~Il~ll~~l~~~~g~til~ITH--------Dl~~v~~~aDri~VMy 228 (327)
T PRK11022 186 --------VTIQAQIIELLLELQQKENMALVLITH--------DLALVAEAAHKIIVMY 228 (327)
T ss_pred --------HHHHHHHHHHHHHHHHHHCCCEEEEEC--------CHHHHHHHCCEEEEEE
T ss_conf --------999999999999999971994899928--------8999998699899998