HHsearch alignment for GI: 254780334 and conserved domain: PRK11247
>PRK11247 ssuB aliphatic sulfonates transport ATP-binding subunit; Provisional.
Probab=97.79 E-value=0.00097 Score=46.82 Aligned_cols=136 Identities=18% Similarity=0.180 Sum_probs=74.7
Q ss_pred CCCCCCEEEEECCCCCCHHHHHHHHHHHHHCCCCCEEEEECCCCHHHHHH------------------------------
Q ss_conf 85787089995498751889999999998503981999986463047888------------------------------
Q gi|254780334|r 86 GFVRGSVILVGGDPGIGKSTLLMQTAASLAYKKHRITYVSGEEAIGQIRL------------------------------ 135 (479)
Q Consensus 86 Gl~~Gs~~Li~G~PGvGKSTL~Lqia~~~a~~g~~vlYvS~EEs~~Qi~~------------------------------ 135 (479)
T Consensus 34 ~I~~GEiv~LiG~nGaGKSTLlr~i~Gl~~p~~G~I~~-~~~-~i~~~~~~i~~vfQ~~~l~~~~tV~eni~~gl~~~~~ 111 (257)
T PRK11247 34 HIPAGQFVAVVGRSGCGKSTLLRLLAGLETPTAGDLLA-GTA-PLAEAQEDTRLMFQDARLLPWKKVIDNVGLGLKGQWR 111 (257)
T ss_pred EECCCCEEEEECCCCCHHHHHHHHHHCCCCCCCCEEEE-CCE-EHHHHHHCEEEEECCCCCCCCCCHHHHHHHHCCCCHH
T ss_conf 88799899999899888999999996589888870898-987-5544311007993256447677899998632141069
Q ss_pred -----HHHHCCCCCCCHHEECCCCHH--H--HHHHHHHCCCCCEEEECHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHH
Q ss_conf -----875201577510000347889--9--9999973169828997216876654204455636799999999999753
Q gi|254780334|r 136 -----RAQRLNTINSSVYIAIETNVE--D--IIATLITNEKPDLVIIDSIQTLWSQTAESSPGTVIQVRTSVQAMIQYAK 206 (479)
Q Consensus 136 -----Ra~Rl~~~~~~i~~~~e~~l~--~--il~~~i~~~~~~~vVIDSIQtl~~~~~~s~~GsvsQvre~~~~L~~~AK 206 (479)
T Consensus 112 ~~~~e~l~~vgL~~~~~~~p~~LSGGqkQRvaiAra-L~~~P~lLlLDEPt----sgLD-----~~~~~~i~~ll~~L~~ 181 (257)
T PRK11247 112 DAALQALAAVGLADRANEWPAALSGGQKQRVALARA-LIHRPRLLLLDEPL----GALD-----ALTRIEMQDLIESLWQ 181 (257)
T ss_pred HHHHHHHHHCCCCHHHHCCHHHCCHHHHHHHHHHHH-HHCCCCEEEEECCC----CCCC-----HHHHHHHHHHHHHHHH
T ss_conf 999999998599135536944489999999999999-84599999980987----6579-----9999999999999999
Q ss_pred HCCCEEEEEEEECCCCCCCCHHHHHHHHHEEEEEE
Q ss_conf 07978999863036654331145787753027851
Q gi|254780334|r 207 KNGVAMVLVGHVTKEGQIAGPRVIEHMVDAVLYFE 241 (479)
Q Consensus 207 ~~~i~vilighvTK~G~iAGp~~LeH~VD~vl~~e 241 (479)
T Consensus 182 e~g~TIi~vTHd--------l~ea~~laDRI~vm~ 208 (257)
T PRK11247 182 QHGFTVLLVTHD--------VSEAVAMADRVLLIE 208 (257)
T ss_pred HHCCEEEEECCC--------HHHHHHHCCEEEEEE
T ss_conf 609899998879--------999999699999998