HHsearch alignment for GI: 254780334 and conserved domain: PRK11889
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional.
Probab=97.91 E-value=0.00023 Score=51.36 Aligned_cols=85 Identities=19% Similarity=0.289 Sum_probs=66.8
Q ss_pred CCEEEEECCCCCCHHHHHHHHHHHHHCCCCCEEEEECCC----CHHHHHHHHHHCCCCCCCHHEECCCCHHHHHHHHHHC
Q ss_conf 708999549875188999999999850398199998646----3047888875201577510000347889999999731
Q gi|254780334|r 90 GSVILVGGDPGIGKSTLLMQTAASLAYKKHRITYVSGEE----AIGQIRLRAQRLNTINSSVYIAIETNVEDIIATLITN 165 (479)
Q Consensus 90 Gs~~Li~G~PGvGKSTL~Lqia~~~a~~g~~vlYvS~EE----s~~Qi~~Ra~Rl~~~~~~i~~~~e~~l~~il~~~i~~ 165 (479)
T Consensus 241 ~q~IALVGPTGVGKTTTIAKLAArf~~~~KkVALITtDTYRIGAVEQLKTYAeIMgVPV~VV--~dp~eL~~AL~~lkdk 318 (436)
T PRK11889 241 VQTIALIGPTGVGKTTTLAKMAWQFHGKKKTVGFITTDHSRIGTVQQLQDYVKTIGFEVIAV--RDEAAMTRALTYFKEE 318 (436)
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHHHCCCCEEEEEECCCCHHHHHHHHHHHHHHHCCCEEEE--CCHHHHHHHHHHHHHC
T ss_conf 71799989999888999999999986169808999806634769999999999849943996--8889999999987633
Q ss_pred CCCCEEEECHH
Q ss_conf 69828997216
Q gi|254780334|r 166 EKPDLVIIDSI 176 (479)
Q Consensus 166 ~~~~~vVIDSI 176 (479)
T Consensus 319 a~~DLILIDTA 329 (436)
T PRK11889 319 ARVDYILIDTA 329 (436)
T ss_pred CCCCEEEEECC
T ss_conf 68888999298