HHsearch alignment for GI: 254780334 and conserved domain: PRK12377

>PRK12377 putative replication protein; Provisional.
Probab=98.67  E-value=1e-06  Score=68.53  Aligned_cols=150  Identities=19%  Similarity=0.290  Sum_probs=88.8

Q ss_pred             HCCCCCC-CCEEEEECCCCCCHHHHHHHHHHHHHCCCCCEEEEECCCCHHHHHHHHHHCCCCCCCHHEECCCCHHHHHHH
Q ss_conf             6598578-708999549875188999999999850398199998646304788887520157751000034788999999
Q gi|254780334|r   83 TGGGFVR-GSVILVGGDPGIGKSTLLMQTAASLAYKKHRITYVSGEEAIGQIRLRAQRLNTINSSVYIAIETNVEDIIAT  161 (479)
Q Consensus        83 LGGGl~~-Gs~~Li~G~PGvGKSTL~Lqia~~~a~~g~~vlYvS~EEs~~Qi~~Ra~Rl~~~~~~i~~~~e~~l~~il~~  161 (479)
T Consensus        93 ~~~~F~~~~~NlIf~G~pGtGKTHLA~AIg~~a~~~G~sVlF~t~~dLv~~L~~-a~~~g-----------~~~~k~l~~  160 (248)
T PRK12377         93 IADELMTGCTNFVFSGKPGTGKNHLAAAIGNRLLAKGRSVIVVTVPDVMSRLHE-SYDNG-----------QSGEKFLQE  160 (248)
T ss_pred             HHHHHHCCCCEEEEECCCCCCHHHHHHHHHHHHHHCCCEEEEEEHHHHHHHHHH-HHHCC-----------CCHHHHHHH
T ss_conf             999873188608998999987889999999999987996999889999999999-99848-----------509999999


Q ss_pred             HHHCCCCCEEEECHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEEEECCC--CCCCCHHHHHHHH-H--E
Q ss_conf             973169828997216876654204455636799999999999753079789998630366--5433114578775-3--0
Q gi|254780334|r  162 LITNEKPDLVIIDSIQTLWSQTAESSPGTVIQVRTSVQAMIQYAKKNGVAMVLVGHVTKE--GQIAGPRVIEHMV-D--A  236 (479)
Q Consensus       162 ~i~~~~~~~vVIDSIQtl~~~~~~s~~GsvsQvre~~~~L~~~AK~~~i~vilighvTK~--G~iAGp~~LeH~V-D--~  236 (479)
T Consensus       161 l---~~~dLLIIDElG~--------~~~s~-~~~~llfqlI~~Ry~~~ks~IiTTNL~f~ew~~ilgdailDRL~~h~~~  228 (248)
T PRK12377        161 L---CKVDLLVLDEIGI--------QRETK-NEQVVLNQIIDRRTASMRSVGMLTNLNHEAMSTLLGERVMDRMTMNGGR  228 (248)
T ss_pred             H---HCCCEEEEHHCCC--------CCCCH-HHHHHHHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHHHHHHCCCE
T ss_conf             7---3389898600057--------88986-7999999999999855798689758997799888759999999866934


Q ss_pred             EEEEECCCCCCCCCCEEEEEEE
Q ss_conf             2785155566654421567632
Q gi|254780334|r  237 VLYFEGGTRNTQYDYRILRSVK  258 (479)
Q Consensus       237 vl~~ege~~~~~~~~R~Lr~~K  258 (479)
T Consensus       229 ~i~f~GeSYRk--~i~~~~~~~  248 (248)
T PRK12377        229 WVNFNWESWRP--NVSHLRIVK  248 (248)
T ss_pred             EEEEECCCCCC--CCCCCCCCC
T ss_conf             99861731113--577565469