HHsearch alignment for GI: 254780334 and conserved domain: PRK12377
>PRK12377 putative replication protein; Provisional.
Probab=98.67 E-value=1e-06 Score=68.53 Aligned_cols=150 Identities=19% Similarity=0.290 Sum_probs=88.8
Q ss_pred HCCCCCC-CCEEEEECCCCCCHHHHHHHHHHHHHCCCCCEEEEECCCCHHHHHHHHHHCCCCCCCHHEECCCCHHHHHHH
Q ss_conf 6598578-708999549875188999999999850398199998646304788887520157751000034788999999
Q gi|254780334|r 83 TGGGFVR-GSVILVGGDPGIGKSTLLMQTAASLAYKKHRITYVSGEEAIGQIRLRAQRLNTINSSVYIAIETNVEDIIAT 161 (479)
Q Consensus 83 LGGGl~~-Gs~~Li~G~PGvGKSTL~Lqia~~~a~~g~~vlYvS~EEs~~Qi~~Ra~Rl~~~~~~i~~~~e~~l~~il~~ 161 (479)
T Consensus 93 ~~~~F~~~~~NlIf~G~pGtGKTHLA~AIg~~a~~~G~sVlF~t~~dLv~~L~~-a~~~g-----------~~~~k~l~~ 160 (248)
T PRK12377 93 IADELMTGCTNFVFSGKPGTGKNHLAAAIGNRLLAKGRSVIVVTVPDVMSRLHE-SYDNG-----------QSGEKFLQE 160 (248)
T ss_pred HHHHHHCCCCEEEEECCCCCCHHHHHHHHHHHHHHCCCEEEEEEHHHHHHHHHH-HHHCC-----------CCHHHHHHH
T ss_conf 999873188608998999987889999999999987996999889999999999-99848-----------509999999
Q ss_pred HHHCCCCCEEEECHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEEEECCC--CCCCCHHHHHHHH-H--E
Q ss_conf 973169828997216876654204455636799999999999753079789998630366--5433114578775-3--0
Q gi|254780334|r 162 LITNEKPDLVIIDSIQTLWSQTAESSPGTVIQVRTSVQAMIQYAKKNGVAMVLVGHVTKE--GQIAGPRVIEHMV-D--A 236 (479)
Q Consensus 162 ~i~~~~~~~vVIDSIQtl~~~~~~s~~GsvsQvre~~~~L~~~AK~~~i~vilighvTK~--G~iAGp~~LeH~V-D--~ 236 (479)
T Consensus 161 l---~~~dLLIIDElG~--------~~~s~-~~~~llfqlI~~Ry~~~ks~IiTTNL~f~ew~~ilgdailDRL~~h~~~ 228 (248)
T PRK12377 161 L---CKVDLLVLDEIGI--------QRETK-NEQVVLNQIIDRRTASMRSVGMLTNLNHEAMSTLLGERVMDRMTMNGGR 228 (248)
T ss_pred H---HCCCEEEEHHCCC--------CCCCH-HHHHHHHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHHHHHHCCCE
T ss_conf 7---3389898600057--------88986-7999999999999855798689758997799888759999999866934
Q ss_pred EEEEECCCCCCCCCCEEEEEEE
Q ss_conf 2785155566654421567632
Q gi|254780334|r 237 VLYFEGGTRNTQYDYRILRSVK 258 (479)
Q Consensus 237 vl~~ege~~~~~~~~R~Lr~~K 258 (479)
T Consensus 229 ~i~f~GeSYRk--~i~~~~~~~ 248 (248)
T PRK12377 229 WVNFNWESWRP--NVSHLRIVK 248 (248)
T ss_pred EEEEECCCCCC--CCCCCCCCC
T ss_conf 99861731113--577565469