HHsearch alignment for GI: 254780334 and conserved domain: PRK13342

>PRK13342 recombination factor protein RarA; Reviewed.
Probab=97.25  E-value=0.0036  Score=42.64  Aligned_cols=64  Identities=25%  Similarity=0.280  Sum_probs=41.9

Q ss_pred             CCCEECCCCCCCCCCCCCCCCHHHHHHHCCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHCCCCCEEEEEC
Q ss_conf             56403133345566632378124888865985787089995498751889999999998503981999986
Q gi|254780334|r   56 ISLFMLSEESIEEESRIQTHIDELDRVTGGGFVRGSVILVGGDPGIGKSTLLMQTAASLAYKKHRITYVSG  126 (479)
Q Consensus        56 ~~~~~l~~~~~~~~~Ri~TGi~eLDrvLGGGl~~Gs~~Li~G~PGvGKSTL~Lqia~~~a~~g~~vlYvS~  126 (479)
T Consensus         7 ~RP~~lde~vGQ~h--llg~~~~L~~~i~~~~~~-s-~Il~GPPG~GKTTlA~iiA~~~~---~~f~~lnA   70 (417)
T PRK13342          7 MRPKTLDEVVGQEH--LLGPGKPLRRMIEAGRLS-S-MILWGPPGTGKTTLARIIAGATD---AEFEALSA   70 (417)
T ss_pred             HCCCCHHHHCCCHH--HHCCCHHHHHHHHCCCCC-E-EEEECCCCCCHHHHHHHHHHHHC---CCEEEEEC
T ss_conf             49998888579877--608971999999769997-5-99889699989999999999868---98899614