HHsearch alignment for GI: 254780334 and conserved domain: PRK13342
>PRK13342 recombination factor protein RarA; Reviewed.
Probab=97.25 E-value=0.0036 Score=42.64 Aligned_cols=64 Identities=25% Similarity=0.280 Sum_probs=41.9
Q ss_pred CCCEECCCCCCCCCCCCCCCCHHHHHHHCCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHCCCCCEEEEEC
Q ss_conf 56403133345566632378124888865985787089995498751889999999998503981999986
Q gi|254780334|r 56 ISLFMLSEESIEEESRIQTHIDELDRVTGGGFVRGSVILVGGDPGIGKSTLLMQTAASLAYKKHRITYVSG 126 (479)
Q Consensus 56 ~~~~~l~~~~~~~~~Ri~TGi~eLDrvLGGGl~~Gs~~Li~G~PGvGKSTL~Lqia~~~a~~g~~vlYvS~ 126 (479)
T Consensus 7 ~RP~~lde~vGQ~h--llg~~~~L~~~i~~~~~~-s-~Il~GPPG~GKTTlA~iiA~~~~---~~f~~lnA 70 (417)
T PRK13342 7 MRPKTLDEVVGQEH--LLGPGKPLRRMIEAGRLS-S-MILWGPPGTGKTTLARIIAGATD---AEFEALSA 70 (417)
T ss_pred HCCCCHHHHCCCHH--HHCCCHHHHHHHHCCCCC-E-EEEECCCCCCHHHHHHHHHHHHC---CCEEEEEC
T ss_conf 49998888579877--608971999999769997-5-99889699989999999999868---98899614