HHsearch alignment for GI: 254780334 and conserved domain: PRK13537

>PRK13537 lipooligosaccharide transporter ATP-binding subunit; Provisional.
Probab=97.63  E-value=0.0024  Score=43.94  Aligned_cols=136  Identities=20%  Similarity=0.261  Sum_probs=73.0

Q ss_pred             CCCCCCEEEEECCCCCCHHHHHHHHHHHHHCCCCCEEEEECCCCHHHHHHHHHHCCCCCCC------------HHE----
Q ss_conf             8578708999549875188999999999850398199998646304788887520157751------------000----
Q gi|254780334|r   86 GFVRGSVILVGGDPGIGKSTLLMQTAASLAYKKHRITYVSGEEAIGQIRLRAQRLNTINSS------------VYI----  149 (479)
Q Consensus        86 Gl~~Gs~~Li~G~PGvGKSTL~Lqia~~~a~~g~~vlYvS~EEs~~Qi~~Ra~Rl~~~~~~------------i~~----  149 (479)
T Consensus        27 ~V~~Gei~gllGpNGAGKTTli~~l~Gl~~p~sG~-v~i~G~~i~~~~~~~r~~iG~~pq~~~l~~~ltv~e~l~~~~~~  105 (304)
T PRK13537         27 HVQPGECFGLLGPNGAGKTTTLKMLLGLTHPDAGT-ISLCGEPVPSRARHARQRVGVVPQFDNLDPDFTVRENLLVFGRY  105 (304)
T ss_pred             EECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCE-EEECCEECCCCHHHHHHCEEEEECCCCCCCCCCHHHHHHHHHHH
T ss_conf             88699599999998972999999997795689768-99999988756288873559991776568898999999999997


Q ss_pred             ---------------ECCCCHHHH-----------------HHHHHHCCCCCEEEECHHHHHHHHHHCCCCCCHHHHHHH
Q ss_conf             ---------------034788999-----------------999973169828997216876654204455636799999
Q gi|254780334|r  150 ---------------AIETNVEDI-----------------IATLITNEKPDLVIIDSIQTLWSQTAESSPGTVIQVRTS  197 (479)
Q Consensus       150 ---------------~~e~~l~~i-----------------l~~~i~~~~~~~vVIDSIQtl~~~~~~s~~GsvsQvre~  197 (479)
T Consensus       106 ~g~~~~~~~~~~~~ll~~~~L~~~~~~~~~~lSgG~kqrl~ia~a-l~~~P~lliLDEPT----~GLD--p----~~r~~  174 (304)
T PRK13537        106 FGLSAAAARALVPPLLEFAKLENKADAKVGELSGGMKRRLTLARA-LVNDPDVLVLDEPT----TGLD--P----QARHL  174 (304)
T ss_pred             CCCCHHHHHHHHHHHHHHCCCHHHHCCCHHHCCHHHHHHHHHHHH-HHCCCCEEEEECCC----CCCC--H----HHHHH
T ss_conf             299999999999999997799568567366799999999999999-83799999993886----6789--9----99999


Q ss_pred             HHHHHHHHHHCCCEEEEEEEECCCCCCCCHHHHHHHHHEEEEEE
Q ss_conf             99999975307978999863036654331145787753027851
Q gi|254780334|r  198 VQAMIQYAKKNGVAMVLVGHVTKEGQIAGPRVIEHMVDAVLYFE  241 (479)
Q Consensus       198 ~~~L~~~AK~~~i~vilighvTK~G~iAGp~~LeH~VD~vl~~e  241 (479)
T Consensus       175 i~~~i~~l~~~G~TillttH~l~E--------~e~lcDrv~ii~  210 (304)
T PRK13537        175 MWERLRSLLARGKTILLTTHFMEE--------AERLCDRLCVIE  210 (304)
T ss_pred             HHHHHHHHHHCCCEEEEECCCHHH--------HHHHCCEEEEEE
T ss_conf             999999999689999998884899--------998699999998