HHsearch alignment for GI: 254780334 and conserved domain: PRK13537
>PRK13537 lipooligosaccharide transporter ATP-binding subunit; Provisional.
Probab=97.63 E-value=0.0024 Score=43.94 Aligned_cols=136 Identities=20% Similarity=0.261 Sum_probs=73.0
Q ss_pred CCCCCCEEEEECCCCCCHHHHHHHHHHHHHCCCCCEEEEECCCCHHHHHHHHHHCCCCCCC------------HHE----
Q ss_conf 8578708999549875188999999999850398199998646304788887520157751------------000----
Q gi|254780334|r 86 GFVRGSVILVGGDPGIGKSTLLMQTAASLAYKKHRITYVSGEEAIGQIRLRAQRLNTINSS------------VYI---- 149 (479)
Q Consensus 86 Gl~~Gs~~Li~G~PGvGKSTL~Lqia~~~a~~g~~vlYvS~EEs~~Qi~~Ra~Rl~~~~~~------------i~~---- 149 (479)
T Consensus 27 ~V~~Gei~gllGpNGAGKTTli~~l~Gl~~p~sG~-v~i~G~~i~~~~~~~r~~iG~~pq~~~l~~~ltv~e~l~~~~~~ 105 (304)
T PRK13537 27 HVQPGECFGLLGPNGAGKTTTLKMLLGLTHPDAGT-ISLCGEPVPSRARHARQRVGVVPQFDNLDPDFTVRENLLVFGRY 105 (304)
T ss_pred EECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCE-EEECCEECCCCHHHHHHCEEEEECCCCCCCCCCHHHHHHHHHHH
T ss_conf 88699599999998972999999997795689768-99999988756288873559991776568898999999999997
Q ss_pred ---------------ECCCCHHHH-----------------HHHHHHCCCCCEEEECHHHHHHHHHHCCCCCCHHHHHHH
Q ss_conf ---------------034788999-----------------999973169828997216876654204455636799999
Q gi|254780334|r 150 ---------------AIETNVEDI-----------------IATLITNEKPDLVIIDSIQTLWSQTAESSPGTVIQVRTS 197 (479)
Q Consensus 150 ---------------~~e~~l~~i-----------------l~~~i~~~~~~~vVIDSIQtl~~~~~~s~~GsvsQvre~ 197 (479)
T Consensus 106 ~g~~~~~~~~~~~~ll~~~~L~~~~~~~~~~lSgG~kqrl~ia~a-l~~~P~lliLDEPT----~GLD--p----~~r~~ 174 (304)
T PRK13537 106 FGLSAAAARALVPPLLEFAKLENKADAKVGELSGGMKRRLTLARA-LVNDPDVLVLDEPT----TGLD--P----QARHL 174 (304)
T ss_pred CCCCHHHHHHHHHHHHHHCCCHHHHCCCHHHCCHHHHHHHHHHHH-HHCCCCEEEEECCC----CCCC--H----HHHHH
T ss_conf 299999999999999997799568567366799999999999999-83799999993886----6789--9----99999
Q ss_pred HHHHHHHHHHCCCEEEEEEEECCCCCCCCHHHHHHHHHEEEEEE
Q ss_conf 99999975307978999863036654331145787753027851
Q gi|254780334|r 198 VQAMIQYAKKNGVAMVLVGHVTKEGQIAGPRVIEHMVDAVLYFE 241 (479)
Q Consensus 198 ~~~L~~~AK~~~i~vilighvTK~G~iAGp~~LeH~VD~vl~~e 241 (479)
T Consensus 175 i~~~i~~l~~~G~TillttH~l~E--------~e~lcDrv~ii~ 210 (304)
T PRK13537 175 MWERLRSLLARGKTILLTTHFMEE--------AERLCDRLCVIE 210 (304)
T ss_pred HHHHHHHHHHCCCEEEEECCCHHH--------HHHHCCEEEEEE
T ss_conf 999999999689999998884899--------998699999998