HHsearch alignment for GI: 254780334 and conserved domain: PRK13541
>PRK13541 cytochrome c biogenesis protein CcmA; Provisional.
Probab=97.34 E-value=0.0033 Score=42.96 Aligned_cols=127 Identities=17% Similarity=0.248 Sum_probs=65.2
Q ss_pred HCCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHCCCCCEEEEECCCCHHHHHHHHHHCC----CC-----CCCHHEECC-
Q ss_conf 65985787089995498751889999999998503981999986463047888875201----57-----751000034-
Q gi|254780334|r 83 TGGGFVRGSVILVGGDPGIGKSTLLMQTAASLAYKKHRITYVSGEEAIGQIRLRAQRLN----TI-----NSSVYIAIE- 152 (479)
Q Consensus 83 LGGGl~~Gs~~Li~G~PGvGKSTL~Lqia~~~a~~g~~vlYvS~EEs~~Qi~~Ra~Rl~----~~-----~~~i~~~~e- 152 (479)
T Consensus 19 isl~i~~G~i~~i~G~NGsGKSTLlk~i~Gl~~p~~G~I-~~~~~~~~~~~~~~~~~i~~~~~l~~~ltv~enl~~~~~~ 97 (195)
T PRK13541 19 LSITFLPSAITYIKGANGCGKSSLLRMIAGIMQPSSGNI-YYKNCNINNIAKPYCTYIGHNLGLKLEMTVFENLKFWSEI 97 (195)
T ss_pred EEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCEEE-EECCEEHHHHCHHHCEEECCCCCCCCCCCHHHHHHHHHHH
T ss_conf 777877997999999999819999999967988984089-9999992032463536635534678777699999999986
Q ss_pred -------------CCHHHH-----------------HHHHHHCCCCCEEEECHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q ss_conf -------------788999-----------------99997316982899721687665420445563679999999999
Q gi|254780334|r 153 -------------TNVEDI-----------------IATLITNEKPDLVIIDSIQTLWSQTAESSPGTVIQVRTSVQAMI 202 (479)
Q Consensus 153 -------------~~l~~i-----------------l~~~i~~~~~~~vVIDSIQtl~~~~~~s~~GsvsQvre~~~~L~ 202 (479)
T Consensus 98 ~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~kqrv~iAr-al~~~p~llllDEPt----~~LD------~~~~~~i~~li 166 (195)
T PRK13541 98 YNSVETLYAAIHYFKLHDLLDEKCYSLSSGMQKVVALAR-LIACQSDLWLLDEVE----TNLS------KENRDLLNNLI 166 (195)
T ss_pred CCHHHHHHHHHHHCCCHHHHHCCHHHCCHHHHHHHHHHH-HHHHCCCEEEEECCC----CCCC------HHHHHHHHHHH
T ss_conf 283999999999849875664866459999999999999-997099999997876----5599------99999999999
Q ss_pred HHHHHCCCEEEEEEEECCC
Q ss_conf 9753079789998630366
Q gi|254780334|r 203 QYAKKNGVAMVLVGHVTKE 221 (479)
Q Consensus 203 ~~AK~~~i~vilighvTK~ 221 (479)
T Consensus 167 ~~~~~~g~~ili~sH~~~~ 185 (195)
T PRK13541 167 VMKANSGGIVLLSSHLESS 185 (195)
T ss_pred HHHHHCCCEEEEECCCHHH
T ss_conf 9998399999998379899