HHsearch alignment for GI: 254780334 and conserved domain: PRK13635
>PRK13635 cbiO cobalt transporter ATP-binding subunit; Provisional.
Probab=97.82 E-value=0.0002 Score=51.83 Aligned_cols=136 Identities=19% Similarity=0.247 Sum_probs=71.2
Q ss_pred CCCCCCEEEEECCCCCCHHHHHHHHHHHHHCCCCCEEEEECCCC-HHHHHHHHHHCCCCCCC--HHEECCC---------
Q ss_conf 85787089995498751889999999998503981999986463-04788887520157751--0000347---------
Q gi|254780334|r 86 GFVRGSVILVGGDPGIGKSTLLMQTAASLAYKKHRITYVSGEEA-IGQIRLRAQRLNTINSS--VYIAIET--------- 153 (479)
Q Consensus 86 Gl~~Gs~~Li~G~PGvGKSTL~Lqia~~~a~~g~~vlYvS~EEs-~~Qi~~Ra~Rl~~~~~~--i~~~~e~--------- 153 (479)
T Consensus 29 ~i~~GE~vaivG~nGsGKSTL~k~l~Gl~~p~~G~-I~i~G~~i~~~~~~~lr~~ig~VfQ~P~~~l~~~tV~e~iafgl 107 (279)
T PRK13635 29 SVYEGEWVAIVGHNGSGKSTLAKLLNGLLLPEAGT-ITVGGMVLSEETVWDVRKQIGMVFQNPDNQFVGTTVQDDVAFGL 107 (279)
T ss_pred EECCCCEEEEECCCCCHHHHHHHHHHCCCCCCCCE-EEECCEECCCCCHHHHHHHEEEEECCHHHHCCCCHHHHHHHHHH
T ss_conf 88799899999999965999999997288888964-99999999857879997436688218565257626899998899
Q ss_pred ---------------------CHHHH-----------------HHHHHHCCCCCEEEECHHHHHHHHHHCCCCCCHHHHH
Q ss_conf ---------------------88999-----------------9999731698289972168766542044556367999
Q gi|254780334|r 154 ---------------------NVEDI-----------------IATLITNEKPDLVIIDSIQTLWSQTAESSPGTVIQVR 195 (479)
Q Consensus 154 ---------------------~l~~i-----------------l~~~i~~~~~~~vVIDSIQtl~~~~~~s~~GsvsQvr 195 (479)
T Consensus 108 ~~~g~~~~e~~~rv~~~l~~~gl~~~~~~~p~~LSGGQrQRvaIAr-aL~~~P~iLilDEPTs----~LD-----~~~~~ 177 (279)
T PRK13635 108 ENIGVPREEMVERVDQALRQVGMEDFLNREPHRLSGGQKQRVAIAG-VLALQPDILILDEATS----MLD-----PQGRR 177 (279)
T ss_pred HHCCCCHHHHHHHHHHHHHHCCCHHHHHCCHHHCCHHHHHHHHHHH-HHHCCCCEEEECCCCC----CCC-----HHHHH
T ss_conf 8779999999999999998779978861793439999999999999-9970999899738745----489-----89999
Q ss_pred HHHHHHHHHHHHCCCEEEEEEEECCCCCCCCHHHHHHHHHEEEEEE
Q ss_conf 9999999975307978999863036654331145787753027851
Q gi|254780334|r 196 TSVQAMIQYAKKNGVAMVLVGHVTKEGQIAGPRVIEHMVDAVLYFE 241 (479)
Q Consensus 196 e~~~~L~~~AK~~~i~vilighvTK~G~iAGp~~LeH~VD~vl~~e 241 (479)
T Consensus 178 ~i~~~l~~L~~~~g~TvI~itHd--------l~~~~~-aDRiivm~ 214 (279)
T PRK13635 178 EVLETVRQLKEQKGITVLSITHD--------LDEAAQ-ADRVIVMN 214 (279)
T ss_pred HHHHHHHHHHHCCCCEEEEEEEC--------HHHHHC-CCEEEEEE
T ss_conf 99999999998379899999767--------899963-99899998