HHsearch alignment for GI: 254780334 and conserved domain: PRK13851
>PRK13851 type IV secretion system protein VirB11; Provisional.
Probab=97.19 E-value=0.007 Score=40.54 Aligned_cols=145 Identities=12% Similarity=0.230 Sum_probs=82.8
Q ss_pred HCCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHCCCCCEEEEECCCCHHHHHHHHHHCCC-CCCCHHEECCCCHHHHHHH
Q ss_conf 659857870899954987518899999999985039819999864630478888752015-7751000034788999999
Q gi|254780334|r 83 TGGGFVRGSVILVGGDPGIGKSTLLMQTAASLAYKKHRITYVSGEEAIGQIRLRAQRLNT-INSSVYIAIETNVEDIIAT 161 (479)
Q Consensus 83 LGGGl~~Gs~~Li~G~PGvGKSTL~Lqia~~~a~~g~~vlYvS~EEs~~Qi~~Ra~Rl~~-~~~~i~~~~e~~l~~il~~ 161 (479)
T Consensus 155 L~~aV~~r~NIlIsGgTGSGKTTllnALl~~IP~-~eRI--vtIEDt~EL~l~~~n~V~l~~~~~~~g~~~vt~~~Ll~~ 231 (343)
T PRK13851 155 LHACVVGRLTMLLCGPTGSGKTTMSKTLISAIPP-QERL--ITIEDTLELVIPHENHVRLLYSKNGAGLGAVTAEHLLQA 231 (343)
T ss_pred HHHHHHCCCCEEEECCCCCCHHHHHHHHHHCCCC-CCCE--EEECCCCCCCCCCCCEEEEEECCCCCCCCCCCHHHHHHH
T ss_conf 9999976988999888986199999999962896-5527--996115002589999689996589888583979999999
Q ss_pred HHHCCCCCEEEE---------CHHHHHHHHHHCCCCCCHHH-----HHHHHHHHHHHHHHCCCEEEEEEEECCCCCCCCH
Q ss_conf 973169828997---------21687665420445563679-----9999999999753079789998630366543311
Q gi|254780334|r 162 LITNEKPDLVII---------DSIQTLWSQTAESSPGTVIQ-----VRTSVQAMIQYAKKNGVAMVLVGHVTKEGQIAGP 227 (479)
Q Consensus 162 ~i~~~~~~~vVI---------DSIQtl~~~~~~s~~GsvsQ-----vre~~~~L~~~AK~~~i~vilighvTK~G~iAGp 227 (479)
T Consensus 232 aL-RmrPDRIivGEvRG~EA~d~L~A~n----TGH~GsitTiHAnSa~~a~~RL~~l~~~s~~g~~l----~~~---~i~ 299 (343)
T PRK13851 232 SL-RMRPDRILLGEMRDDAAWAYLSEVV----SGHPGSISTIHGANPVQGFKKLFSLVKSSPQGASL----EDR---TLI 299 (343)
T ss_pred HH-CCCCCEEEEEEECCHHHHHHHHHHH----CCCCCCCEEECCCCHHHHHHHHHHHHHHCCCCCCC----CHH---HHH
T ss_conf 86-0799828998526699999999984----69998303356799999999999998735247999----999---999
Q ss_pred HHHHHHHHEEEEEEC
Q ss_conf 457877530278515
Q gi|254780334|r 228 RVIEHMVDAVLYFEG 242 (479)
Q Consensus 228 ~~LeH~VD~vl~~eg 242 (479)
T Consensus 300 ~~i~~~IDvVV~~~r 314 (343)
T PRK13851 300 DMLATAIDVIIPFRA 314 (343)
T ss_pred HHHHHHCCEEEEEEE
T ss_conf 999985999999997