HHsearch alignment for GI: 254780334 and conserved domain: TIGR00665
>TIGR00665 DnaB replicative DNA helicase; InterPro: IPR007692 This family includes the replicative DNA helicases, helicase DnaB, which exhibit DNA-dependent ATPase activity. Helicase DnaB is a homohexameric protein required for DNA replication. The homohexamer can form a ring around a single strand of DNA near a replication fork. An intein of more than 400 residues is found at a conserved location in DnaB of Synechocystis PCC6803, Rhodothermus marinus (both experimentally confirmed), and Mycobacterium tuberculosis. The intein removes itself by a self-splicing reaction. Replication protein, GP12 from Bacteriophage P22 also belongs to this family .; GO: 0003677 DNA binding, 0003678 DNA helicase activity, 0005524 ATP binding, 0006260 DNA replication.
Probab=99.34 E-value=1.9e-11 Score=103.13 Aligned_cols=204 Identities=22% Similarity=0.326 Sum_probs=144.3
Q ss_pred CCCCCCCCCCCHHHHHHHCCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHC------CCCCEEEEECCCCHHHHHHHHH-
Q ss_conf 556663237812488886598578708999549875188999999999850------3981999986463047888875-
Q gi|254780334|r 66 IEEESRIQTHIDELDRVTGGGFVRGSVILVGGDPGIGKSTLLMQTAASLAY------KKHRITYVSGEEAIGQIRLRAQ- 138 (479)
Q Consensus 66 ~~~~~Ri~TGi~eLDrvLGGGl~~Gs~~Li~G~PGvGKSTL~Lqia~~~a~------~g~~vlYvS~EEs~~Qi~~Ra~- 138 (479)
T Consensus 192 ~~~~~G~~~gf~~ld~~-~~G~~~~~l~~~~arP~~Gkt~~~~n~~~~~~~~~~~~~~~~~~~~fsle~~~~~~~~r~~~ 270 (465)
T TIGR00665 192 HLGVTGIPTGFYDLDKL-TGGFQPGDLIIVAARPSMGKTAFALNIAANAANREKFDKEDKPVLFFSLEMSAEQLALRLLA 270 (465)
T ss_pred CCCCCCCCCCCHHHHHH-HCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCHHHHHHHHHH
T ss_conf 22256665320134454-32677565588833787525889999998776432024233503788514677999999987
Q ss_pred -------------------------HCC-CCC-CCHHEECCC--CHHHH---HHHHHHCC-C-CCEEEECHHHHHHHHHH
Q ss_conf -------------------------201-577-510000347--88999---99997316-9-82899721687665420
Q gi|254780334|r 139 -------------------------RLN-TIN-SSVYIAIET--NVEDI---IATLITNE-K-PDLVIIDSIQTLWSQTA 184 (479)
Q Consensus 139 -------------------------Rl~-~~~-~~i~~~~e~--~l~~i---l~~~i~~~-~-~~~vVIDSIQtl~~~~~ 184 (479)
T Consensus 271 ~~~~~~~~~~~~g~l~~~~~~~l~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~gp~~~~~~dyl~l~~~~~~ 350 (465)
T TIGR00665 271 SESRIDSTKLRTGRLDDEEWEKLTKAMGELSDKLPLYIDDTSGITLTEIRSQARRLKRESGGPLGLILIDYLQLISGSKN 350 (465)
T ss_pred HHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCEEECCCCCCHHHHHHHHHHHHHHCCCCCEEHHHHHHHHHHCCCC
T ss_conf 65310134432003237788889999887530156224205775299999999998864178501012345777410002
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEEEECCCC-----------CCCCHHHHHHHHHEEEEEECCCC-CC---CC
Q ss_conf 44556367999999999997530797899986303665-----------43311457877530278515556-66---54
Q gi|254780334|r 185 ESSPGTVIQVRTSVQAMIQYAKKNGVAMVLVGHVTKEG-----------QIAGPRVIEHMVDAVLYFEGGTR-NT---QY 249 (479)
Q Consensus 185 ~s~~GsvsQvre~~~~L~~~AK~~~i~vilighvTK~G-----------~iAGp~~LeH~VD~vl~~ege~~-~~---~~ 249 (479)
T Consensus 351 ~~~~~r~~~~~~i~~~lk~~a~e~~~P~~al~~l~r~~e~r~d~rP~~~dlresG~~e~dad~~~~~~r~~~~~~~~~~~ 430 (465)
T TIGR00665 351 SYGDNRHQEVAEISRSLKALARELNVPVIALSQLSRSLEERKDKRPILSDLRESGSIEQDADLVLFLYRDEDYDKESEDK 430 (465)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCCCCHHHHHHCCCCCCCCCEEEEEHHCCCCCCCCCCC
T ss_conf 35640468899998999988877414166566653223201345631233332167532210121100010036543112
Q ss_pred C------CEEEEEEEECCCCCCCEEEE
Q ss_conf 4------21567632025676512799
Q gi|254780334|r 250 D------YRILRSVKNRFGPTDEIGVF 270 (479)
Q Consensus 250 ~------~R~Lr~~KNRfG~t~e~gvf 270 (479)
T Consensus 431 ~~~~~~~~~e~~~~k~rnGp~G~~~~~ 457 (465)
T TIGR00665 431 GGPKNLFEAELIIAKNRNGPTGTVKLL 457 (465)
T ss_pred CCCCHHEEEEEEEEECCCCCCCEEEEE
T ss_conf 455200000000000367874148875