HHsearch alignment for GI: 254780334 and conserved domain: TIGR01420
>TIGR01420 pilT_fam twitching motility protein; InterPro: IPR006321 These represent the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction . Members of this family may be found in some species that do not have type IV pili but have related structures for DNA uptake and natural transformation. ; GO: 0005524 ATP binding, 0006810 transport.
Probab=96.97 E-value=0.0018 Score=44.83 Aligned_cols=99 Identities=21% Similarity=0.300 Sum_probs=66.2
Q ss_pred CCCCCCHHHHHHHCCCCC-C---------CCEEEEECCCCCCHHHHHHHHHHHHHCCCCCEEEEECCCCHHHHHHHHHHC
Q ss_conf 323781248888659857-8---------708999549875188999999999850398199998646304788887520
Q gi|254780334|r 71 RIQTHIDELDRVTGGGFV-R---------GSVILVGGDPGIGKSTLLMQTAASLAYKKHRITYVSGEEAIGQIRLRAQRL 140 (479)
Q Consensus 71 Ri~TGi~eLDrvLGGGl~-~---------Gs~~Li~G~PGvGKSTL~Lqia~~~a~~g~~vlYvS~EEs~~Qi~~Ra~Rl 140 (479)
T Consensus 101 ~ip~~Ip~fe~L---GLP~~v~~~~a~~~~GLiLVTGPTGSGKSTTlAsmIDyIN~~~-~~HIiTIEDPIEyvh~-~~~s 175 (350)
T TIGR01420 101 LIPSKIPTFEEL---GLPRPVLRELAERPRGLILVTGPTGSGKSTTLASMIDYINKNK-AGHIITIEDPIEYVHK-NKRS 175 (350)
T ss_pred HCCCCCCCHHHC---CCCHHHHHHHHHCCCCCEEEECCCCCCHHHHHHHHHHHHHCCC-CCCCEEEECCEEEEEC-CCEE
T ss_conf 115346216663---7987899999836699389876889867899999997874038-8882563177314104-7702
Q ss_pred CCCCCCHHEECCCCHHHHHHHHHHCCCCCEEEECHH
Q ss_conf 157751000034788999999973169828997216
Q gi|254780334|r 141 NTINSSVYIAIETNVEDIIATLITNEKPDLVIIDSI 176 (479)
Q Consensus 141 ~~~~~~i~~~~e~~l~~il~~~i~~~~~~~vVIDSI 176 (479)
T Consensus 176 li~QREv-G~DT~sF~~ALraALRe-DPDvILiGE~ 209 (350)
T TIGR01420 176 LINQREV-GLDTLSFANALRAALRE-DPDVILIGEM 209 (350)
T ss_pred EEECCCC-CCCHHHHHHHHHHHHCC-CCCEEEEECC
T ss_conf 4543624-67545799997684102-8988998255