HHsearch alignment for GI: 254780334 and conserved domain: TIGR02236
>TIGR02236 recomb_radA DNA repair and recombination protein RadA; InterPro: IPR011938 This family consists exclusively of archaeal RadA protein, a homolog of bacterial RecA, eukaryotic RAD51 (IPR011941 from INTERPRO), and archaeal RadB (IPR011939 from INTERPRO). This protein is involved in DNA repair and recombination. The member from Pyrococcus horikoshii contains an intein .; GO: 0003684 damaged DNA binding, 0005524 ATP binding, 0008094 DNA-dependent ATPase activity, 0006281 DNA repair, 0006310 DNA recombination.
Probab=99.79 E-value=7.5e-18 Score=149.77 Aligned_cols=209 Identities=23% Similarity=0.373 Sum_probs=156.8
Q ss_pred CCCCCCCCCCCCHHHHHHHCCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHCC---------------CC-CEEEEECCC
Q ss_conf 45566632378124888865985787089995498751889999999998503---------------98-199998646
Q gi|254780334|r 65 SIEEESRIQTHIDELDRVTGGGFVRGSVILVGGDPGIGKSTLLMQTAASLAYK---------------KH-RITYVSGEE 128 (479)
Q Consensus 65 ~~~~~~Ri~TGi~eLDrvLGGGl~~Gs~~Li~G~PGvGKSTL~Lqia~~~a~~---------------g~-~vlYvS~EE 128 (479)
T Consensus 71 rR~~v~kitTgs~~LDeLLGGGiETqaiTE~~GEFGSGKTQ~~HqLAVnVQlP~flfydeeave~GGL~gp~av~IDTEn 150 (333)
T TIGR02236 71 RRKSVGKITTGSKELDELLGGGIETQAITEVFGEFGSGKTQICHQLAVNVQLPEFLFYDEEAVEKGGLEGPKAVYIDTEN 150 (333)
T ss_pred HHHCCCEEECCCHHHHHHCCCCCCCEEEEEEEEEECCCHHHHHHHHHHHHCCCCHHHCCCHHHCCCCCCCCEEEEEECCC
T ss_conf 87207504448636765607960000588877100786578766765532287112101100014776787689985597
Q ss_pred CH--HHHHHHHH--HCC-------CCC----CCHHEECCCCHHH------HHHHHHHCC-----CCCEEEECHHHHHHHH
Q ss_conf 30--47888875--201-------577----5100003478899------999997316-----9828997216876654
Q gi|254780334|r 129 AI--GQIRLRAQ--RLN-------TIN----SSVYIAIETNVED------IIATLITNE-----KPDLVIIDSIQTLWSQ 182 (479)
Q Consensus 129 s~--~Qi~~Ra~--Rl~-------~~~----~~i~~~~e~~l~~------il~~~i~~~-----~~~~vVIDSIQtl~~~ 182 (479)
T Consensus 151 TFRPERI~qmA~GL~~g~l~~~melD~~evL~nI~vARAyNS~HQmllve~~~~li~e~~~~~~pv~L~~VDSLtsHFRa 230 (333)
T TIGR02236 151 TFRPERIEQMAKGLARGTLQAAMELDPDEVLKNIYVARAYNSNHQMLLVEKAKELIKELKNEDKPVRLLIVDSLTSHFRA 230 (333)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHCCEEEEEEECCHHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCCCCCCC
T ss_conf 98625799999863111366653278777720304778526314799999999999730157994689998121002236
Q ss_pred HHCCCCCCH---HH-HHHHHHHHHHHHHHCCCEEEEEEEE-CCCCCCCC-------HHHHHHHHHEEEEEECCCCCCCCC
Q ss_conf 204455636---79-9999999999753079789998630-36654331-------145787753027851555666544
Q gi|254780334|r 183 TAESSPGTV---IQ-VRTSVQAMIQYAKKNGVAMVLVGHV-TKEGQIAG-------PRVIEHMVDAVLYFEGGTRNTQYD 250 (479)
Q Consensus 183 ~~~s~~Gsv---sQ-vre~~~~L~~~AK~~~i~vilighv-TK~G~iAG-------p~~LeH~VD~vl~~ege~~~~~~~ 250 (479)
T Consensus 231 EY~GR-g~LA~RQQKLnkHlh~L~~ladlyn~aV~VTNQV~A~PDaFFG~Pt~piGGhilgH~AT~R~yLrK----sk~~ 305 (333)
T TIGR02236 231 EYVGR-GNLAERQQKLNKHLHDLLRLADLYNAAVVVTNQVMARPDAFFGDPTKPIGGHILGHAATFRLYLRK----SKGD 305 (333)
T ss_pred CCCCH-HHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCCCCCCCEEECCCCCEEEEEEE----CCCC
T ss_conf 76450-247889869878899886541402178998556122787344869877677154127856899996----4798
Q ss_pred CEEEEEEEECCCCCCCEEEEEECCCCCEE
Q ss_conf 21567632025676512799851566311
Q gi|254780334|r 251 YRILRSVKNRFGPTDEIGVFEMSDKGLQE 279 (479)
Q Consensus 251 ~R~Lr~~KNRfG~t~e~gvf~m~~~Gl~~ 279 (479)
T Consensus 306 kRiarl~DsP~LPeGEa-vfriTe~Gi~D 333 (333)
T TIGR02236 306 KRIARLVDSPHLPEGEA-VFRITEKGIED 333 (333)
T ss_pred EEEEEEECCCCCCCCCE-EEEEECCCCCC
T ss_conf 14899873898988306-88674478899