HHsearch alignment for GI: 254780334 and conserved domain: TIGR02236

>TIGR02236 recomb_radA DNA repair and recombination protein RadA; InterPro: IPR011938 This family consists exclusively of archaeal RadA protein, a homolog of bacterial RecA, eukaryotic RAD51 (IPR011941 from INTERPRO), and archaeal RadB (IPR011939 from INTERPRO). This protein is involved in DNA repair and recombination. The member from Pyrococcus horikoshii contains an intein .; GO: 0003684 damaged DNA binding, 0005524 ATP binding, 0008094 DNA-dependent ATPase activity, 0006281 DNA repair, 0006310 DNA recombination.
Probab=99.79  E-value=7.5e-18  Score=149.77  Aligned_cols=209  Identities=23%  Similarity=0.373  Sum_probs=156.8

Q ss_pred             CCCCCCCCCCCCHHHHHHHCCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHCC---------------CC-CEEEEECCC
Q ss_conf             45566632378124888865985787089995498751889999999998503---------------98-199998646
Q gi|254780334|r   65 SIEEESRIQTHIDELDRVTGGGFVRGSVILVGGDPGIGKSTLLMQTAASLAYK---------------KH-RITYVSGEE  128 (479)
Q Consensus        65 ~~~~~~Ri~TGi~eLDrvLGGGl~~Gs~~Li~G~PGvGKSTL~Lqia~~~a~~---------------g~-~vlYvS~EE  128 (479)
T Consensus        71 rR~~v~kitTgs~~LDeLLGGGiETqaiTE~~GEFGSGKTQ~~HqLAVnVQlP~flfydeeave~GGL~gp~av~IDTEn  150 (333)
T TIGR02236        71 RRKSVGKITTGSKELDELLGGGIETQAITEVFGEFGSGKTQICHQLAVNVQLPEFLFYDEEAVEKGGLEGPKAVYIDTEN  150 (333)
T ss_pred             HHHCCCEEECCCHHHHHHCCCCCCCEEEEEEEEEECCCHHHHHHHHHHHHCCCCHHHCCCHHHCCCCCCCCEEEEEECCC
T ss_conf             87207504448636765607960000588877100786578766765532287112101100014776787689985597


Q ss_pred             CH--HHHHHHHH--HCC-------CCC----CCHHEECCCCHHH------HHHHHHHCC-----CCCEEEECHHHHHHHH
Q ss_conf             30--47888875--201-------577----5100003478899------999997316-----9828997216876654
Q gi|254780334|r  129 AI--GQIRLRAQ--RLN-------TIN----SSVYIAIETNVED------IIATLITNE-----KPDLVIIDSIQTLWSQ  182 (479)
Q Consensus       129 s~--~Qi~~Ra~--Rl~-------~~~----~~i~~~~e~~l~~------il~~~i~~~-----~~~~vVIDSIQtl~~~  182 (479)
T Consensus       151 TFRPERI~qmA~GL~~g~l~~~melD~~evL~nI~vARAyNS~HQmllve~~~~li~e~~~~~~pv~L~~VDSLtsHFRa  230 (333)
T TIGR02236       151 TFRPERIEQMAKGLARGTLQAAMELDPDEVLKNIYVARAYNSNHQMLLVEKAKELIKELKNEDKPVRLLIVDSLTSHFRA  230 (333)
T ss_pred             CCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHCCEEEEEEECCHHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCCCCCCC
T ss_conf             98625799999863111366653278777720304778526314799999999999730157994689998121002236


Q ss_pred             HHCCCCCCH---HH-HHHHHHHHHHHHHHCCCEEEEEEEE-CCCCCCCC-------HHHHHHHHHEEEEEECCCCCCCCC
Q ss_conf             204455636---79-9999999999753079789998630-36654331-------145787753027851555666544
Q gi|254780334|r  183 TAESSPGTV---IQ-VRTSVQAMIQYAKKNGVAMVLVGHV-TKEGQIAG-------PRVIEHMVDAVLYFEGGTRNTQYD  250 (479)
Q Consensus       183 ~~~s~~Gsv---sQ-vre~~~~L~~~AK~~~i~vilighv-TK~G~iAG-------p~~LeH~VD~vl~~ege~~~~~~~  250 (479)
T Consensus       231 EY~GR-g~LA~RQQKLnkHlh~L~~ladlyn~aV~VTNQV~A~PDaFFG~Pt~piGGhilgH~AT~R~yLrK----sk~~  305 (333)
T TIGR02236       231 EYVGR-GNLAERQQKLNKHLHDLLRLADLYNAAVVVTNQVMARPDAFFGDPTKPIGGHILGHAATFRLYLRK----SKGD  305 (333)
T ss_pred             CCCCH-HHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCCCCCCCEEECCCCCEEEEEEE----CCCC
T ss_conf             76450-247889869878899886541402178998556122787344869877677154127856899996----4798


Q ss_pred             CEEEEEEEECCCCCCCEEEEEECCCCCEE
Q ss_conf             21567632025676512799851566311
Q gi|254780334|r  251 YRILRSVKNRFGPTDEIGVFEMSDKGLQE  279 (479)
Q Consensus       251 ~R~Lr~~KNRfG~t~e~gvf~m~~~Gl~~  279 (479)
T Consensus       306 kRiarl~DsP~LPeGEa-vfriTe~Gi~D  333 (333)
T TIGR02236       306 KRIARLVDSPHLPEGEA-VFRITEKGIED  333 (333)
T ss_pred             EEEEEEECCCCCCCCCE-EEEEECCCCCC
T ss_conf             14899873898988306-88674478899