HHsearch alignment for GI: 254780334 and conserved domain: TIGR02653
>TIGR02653 Lon_rel_chp conserved hypothetical protein; InterPro: IPR013473 This entry describes a protein family of unknown function, about 690 residues in length, in which some members show C-terminal sequence similarity to IPR008269 from INTERPRO, which is the Lon protease C-terminal proteolytic domain, from MEROPS family S16. However, the annotated catalytic sites of Escherichia coli Lon protease are not conserved in members of this family. Members have a motif GP[RK][GS]TGKS, similar to the ATP-binding P-loop motif GxxGxGK[ST]..
Probab=98.22 E-value=1.9e-05 Score=59.24 Aligned_cols=157 Identities=20% Similarity=0.306 Sum_probs=111.8
Q ss_pred CCCCCEEEEEEEC--CCCCC-EEEEEEEECCCCCCCCEEEEECCC-----HHHHHHHHHHHHHHC-----CCCCCCCHHH
Q ss_conf 6767348997304--89741-155331011577877247760468-----666555589887511-----1102462221
Q gi|254780334|r 293 STSPGTAVFAGIE--GTRAL-LVEIQSLVVPTSLGMPRRTVVGWD-----SSRLAMILAVLEARC-----NIKFGNHDVH 359 (479)
Q Consensus 293 ~~~~Gs~v~~~~e--G~r~~-lvEvQALv~~~~~~~p~R~~~G~d-----~~rl~~llAvl~k~~-----~~~~~~~Di~ 359 (479)
T Consensus 494 ~~~pG~vy~v~~~~~G~~GlYrfEvqv~AG-----~GK~~~sG~Gs~t~~KEsi~~aF~yfkgn~~~~s~~~~f~~~dyh 568 (677)
T TIGR02653 494 LLKPGVVYAVTQNESGKVGLYRFEVQVVAG-----SGKHKVSGLGSNTTAKESIRVAFDYFKGNLKRISASAKFSEKDYH 568 (677)
T ss_pred CCCCCEEEEEEECCCCCEEEEEEEEEEEEC-----CCCEEEEECCCCCCCHHHHHHHHHHHHCCCCCCCEEEEEECCCEE
T ss_conf 888872899865588856368988888734-----761223212566310167887667753134223146787064007
Q ss_pred EECCCCCCCC-CCCCCHHHHHHHHHHHCCCCCCCCEEEEEEEECCCEEEEECCHHHHHHHHHHCCCCEEEECHHHHHHCC
Q ss_conf 0014561115-432587999999997248868878599987424731634078899999999769989997757653228
Q gi|254780334|r 360 LNIAGGYRIS-EPAADVAVAAALISSILSIPLPSDFVYFGEVSLSGSVRAVGHMQQRLKEAEKIGFLSGVFPESAKGECK 438 (479)
Q Consensus 360 ~nv~gG~~i~-~pa~DLaia~ailSs~~~~~~~~~~~~~GEl~L~GeIR~V~~i~~ri~eA~~~G~~~~iiP~~n~~e~~ 438 (479)
T Consensus 569 lhv~dL~~~g~s~~~~laa~Ial~S~~~~~~vqeqmviLG~mtigG~i~~v~~La~~LQ~a~d~GAKr~liP~~sa~~i~ 648 (677)
T TIGR02653 569 LHVVDLHNTGVSTEASLAALIALCSALLKRPVQEQMVILGSMTIGGVIKPVQDLAGSLQLAMDSGAKRVLIPLSSARDIL 648 (677)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHHHHHCCCCCCCEEEEEEEEECCCCHHHHHHHHHHHHHHHCCCCEEECCCCCCCCCC
T ss_conf 99871317885556789999999999861688875189863132540043555468899998618754740300244546
Q ss_pred ------CCCEEEEEECCHHHHH
Q ss_conf ------5880899838399999
Q gi|254780334|r 439 ------IGMLDRQYIKNLSDLV 454 (479)
Q Consensus 439 ------~~~i~i~~v~~l~e~i 454 (479)
T Consensus 649 ~Vp~elf~Kfq~sFy~dP~dAv 670 (677)
T TIGR02653 649 TVPAELFSKFQISFYSDPVDAV 670 (677)
T ss_pred CCCHHHEECCCEEECCCHHHHH
T ss_conf 3785260224303437838999