HHsearch alignment for GI: 254780334 and conserved domain: TIGR02903
>TIGR02903 spore_lon_C ATP-dependent protease, Lon family; InterPro: IPR014252 This entry shows some relation to the widely distributed ATP-dependent protease La, also called Lon or LonA (IPR004815 from INTERPRO), but is more closely related to LonB (IPR014251 from INTERPRO), a LonA paralog found only in endospore-forming bacteria. Proteins in this entry are unassigned peptidases belonging to the MEROPS peptidase family S16 (lon protease family, clan SJ). They are restricted to a subset of endospore-forming species, and probably participate in the program of endospore formation. We propose the designation LonC..
Probab=99.96 E-value=3.5e-28 Score=225.19 Aligned_cols=188 Identities=23% Similarity=0.392 Sum_probs=166.4
Q ss_pred EEECCCCCEEECCHHHHHHCC----CCCCCCCEEEEEEECCCCCCEEEEEEEECCCCC---CCCEE--EEECCCHHHHHH
Q ss_conf 985156631101404555114----766767348997304897411553310115778---77247--760468666555
Q gi|254780334|r 270 FEMSDKGLQEVSDPSKIFLSD----RDSTSPGTAVFAGIEGTRALLVEIQSLVVPTSL---GMPRR--TVVGWDSSRLAM 340 (479)
Q Consensus 270 f~m~~~Gl~~v~~ps~~fl~~----~~~~~~Gs~v~~~~eG~r~~lvEvQALv~~~~~---~~p~R--~~~G~d~~rl~~ 340 (479)
T Consensus 417 ~~I~~~dv~evv~~sRl~Py~~~~~~~~~EvG~vFGLGV~gy~GS~lEIEa~aF~A~~~GkG~~RfNdTAGSMaKDSvFN 496 (616)
T TIGR02903 417 VTITADDVKEVVQISRLSPYEKVKASDTYEVGHVFGLGVSGYLGSVLEIEAVAFEAKEKGKGTVRFNDTAGSMAKDSVFN 496 (616)
T ss_pred EEEEHHHHHHHHHHCCCCCHHHCCCCCCCCEEEEEECCCCCCCCCEEEEEEEEECCCCCCCEEEEEECCCCCCHHHHHHH
T ss_conf 26618677767753045750112468886304687042121002333555044237789950588615655303577898
Q ss_pred HHHHHHHHCCCCCCCCHHHEECCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCEEEEEEEECCCEEEEECCHHHHHHHHH
Q ss_conf 58988751111024622210014561115432587999999997248868878599987424731634078899999999
Q gi|254780334|r 341 ILAVLEARCNIKFGNHDVHLNIAGGYRISEPAADVAVAAALISSILSIPLPSDFVYFGEVSLSGSVRAVGHMQQRLKEAE 420 (479)
Q Consensus 341 llAvl~k~~~~~~~~~Di~~nv~gG~~i~~pa~DLaia~ailSs~~~~~~~~~~~~~GEl~L~GeIR~V~~i~~ri~eA~ 420 (479)
T Consensus 497 AasviRk~T~~D~~~yD~HVNViGGG~IDGPSAG~Ai~~~~~SA~~~~p~rQDvAiTGEiS~~G~ikpVGGi~EKIYGAk 576 (616)
T TIGR02903 497 AASVIRKITGKDLKDYDIHVNVIGGGRIDGPSAGAAITLCIISAILDKPIRQDVAITGEISLRGKIKPVGGIFEKIYGAK 576 (616)
T ss_pred HHHHHHHHCCCCCCCCCEEEEEECCCCCCCCCHHHHHHHHHHHHHCCCCCEEEEEEEEEEEEECEEEECCCCCCCCHHHH
T ss_conf 89998653046834165178885277017532579999999998708983022565103886021651266333321455
Q ss_pred HCCCCEEEECHHHHHHCC--CCCEEEEEECCHHHHHHHH
Q ss_conf 769989997757653228--5880899838399999986
Q gi|254780334|r 421 KIGFLSGVFPESAKGECK--IGMLDRQYIKNLSDLVKKI 457 (479)
Q Consensus 421 ~~G~~~~iiP~~n~~e~~--~~~i~i~~v~~l~e~i~~l 457 (479)
T Consensus 577 ~~gi~~V~~P~~N~kdvPqg~~~I~v~~v~~iEE~~~iv 615 (616)
T TIGR02903 577 RAGIKTVVIPEDNLKDVPQGLKGIEVKAVKTIEELLEIV 615 (616)
T ss_pred HCCCCEEECCCCCCCCCCCCCCCCEEEEECCHHHHHHHH
T ss_conf 347435436730021356678871589705189899860