HHsearch alignment for GI: 254780334 and conserved domain: TIGR03305
>TIGR03305 alt_F1F0_F1_bet alternate F1F0 ATPase, F1 subunit beta. A small number of taxonomically diverse prokaryotic species have what appears to be a second ATP synthase, in addition to the normal F1F0 ATPase in bacteria and A1A0 ATPase in archaea. These enzymes use ion gradients to synthesize ATP, and in principle may run in either direction. This model represents the F1 beta subunit of this apparent second ATP synthase.
Probab=97.59 E-value=0.0023 Score=44.10 Aligned_cols=108 Identities=18% Similarity=0.270 Sum_probs=66.6
Q ss_pred CCCCCCCCHHHHHHHCCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHC-CCCCEEEEE-CCCCHH--HHHHHHHHCCCCC
Q ss_conf 663237812488886598578708999549875188999999999850-398199998-646304--7888875201577
Q gi|254780334|r 69 ESRIQTHIDELDRVTGGGFVRGSVILVGGDPGIGKSTLLMQTAASLAY-KKHRITYVS-GEEAIG--QIRLRAQRLNTIN 144 (479)
Q Consensus 69 ~~Ri~TGi~eLDrvLGGGl~~Gs~~Li~G~PGvGKSTL~Lqia~~~a~-~g~~vlYvS-~EEs~~--Qi~~Ra~Rl~~~~ 144 (479)
T Consensus 119 ~e~l~TGIkaID~l~--pigrGqr~gIfggaGvGKT~Ll~e~i~n~~~~~~~v~V~~~IGER~rE~~e~~~el~~~g~l~ 196 (449)
T TIGR03305 119 SEVFETGIKAIDVLV--PLERGGKAGLFGGAGVGKTVLLTEMIHNMVGQHQGVSIFCGIGERCREGEELYREMKEAGVLD 196 (449)
T ss_pred CCCEECCCEEHHHCC--CCCCCCEEEEECCCCCCCCCHHHHHHHHHHHHCCCEEEEEEEEEEHHHHHHHHHHHHHCCCCC
T ss_conf 864002844023024--524575656652799984101899998656414886899997452167999999987536654
Q ss_pred CCHHEECCCC---HH---------HHHHHHH-HCCCCCEEEECHHHH
Q ss_conf 5100003478---89---------9999997-316982899721687
Q gi|254780334|r 145 SSVYIAIETN---VE---------DIIATLI-TNEKPDLVIIDSIQT 178 (479)
Q Consensus 145 ~~i~~~~e~~---l~---------~il~~~i-~~~~~~~vVIDSIQt 178 (479)
T Consensus 197 ~tv~V~a~~depp~~R~~~~~~a~tiAEyfrd~~g~dVLl~~D~ltr 243 (449)
T TIGR03305 197 NTVMVFGQMNEPPGARFRVGHTALTMAEYFRDDEKQDVLLLIDNIFR 243 (449)
T ss_pred EEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECHHH
T ss_conf 26999836989879999999987769999886179808999967689