HHsearch alignment for GI: 254780334 and conserved domain: TIGR03324

>TIGR03324 alt_F1F0_F1_al alternate F1F0 ATPase, F1 subunit alpha. A small number of taxonomically diverse prokaryotic species, including Methanosarcina barkeri, have what appears to be a second ATP synthase, in addition to the normal F1F0 ATPase in bacteria and A1A0 ATPase in archaea. These enzymes use ion gradients to synthesize ATP, and in principle may run in either direction. This model represents the F1 alpha subunit of this apparent second ATP synthase.
Probab=97.82  E-value=0.00074  Score=47.67  Aligned_cols=169  Identities=16%  Similarity=0.231  Sum_probs=102.7

Q ss_pred             CCCCCCCHHHHHHHCCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHCCCCCEEEEECCCCHHHHHHHHHHC---CCCCCC
Q ss_conf             63237812488886598578708999549875188999999999850398199998646304788887520---157751
Q gi|254780334|r   70 SRIQTHIDELDRVTGGGFVRGSVILVGGDPGIGKSTLLMQTAASLAYKKHRITYVSGEEAIGQIRLRAQRL---NTINSS  146 (479)
Q Consensus        70 ~Ri~TGi~eLDrvLGGGl~~Gs~~Li~G~PGvGKSTL~Lqia~~~a~~g~~vlYvS~EEs~~Qi~~Ra~Rl---~~~~~~  146 (479)
T Consensus       144 epL~TGIkaID~li--PIGrGQRelIigdrgtGKTtla~dtIinqk~~~vicVyvaIGqr~seV~~~v~~l~~~gal~~T  221 (497)
T TIGR03324       144 VPLQTGLKVIDALI--PIGRGQRELILGDRQTGKTAIAIDTILNQKGRNVLCIYCAIGQRASAVAKVVANLREHGAMDYT  221 (497)
T ss_pred             CCCCCCHHHHHCCC--CCCCCCEEEEECCCCCCHHHHHHHHHHHCCCCCEEEEEEEEEEEHHHHHHHHHHHHHCCCCCCE
T ss_conf             71002414554246--5567746776458888800889999970456671899997325078799999998748752341


Q ss_pred             HHEECCCC---H---------HHHHHHHHHCCCCCEEEECHHHHHHH------------HHHCCCCCCHHHHHHHHHHHH
Q ss_conf             00003478---8---------99999997316982899721687665------------420445563679999999999
Q gi|254780334|r  147 VYIAIETN---V---------EDIIATLITNEKPDLVIIDSIQTLWS------------QTAESSPGTVIQVRTSVQAMI  202 (479)
Q Consensus       147 i~~~~e~~---l---------~~il~~~i~~~~~~~vVIDSIQtl~~------------~~~~s~~GsvsQvre~~~~L~  202 (479)
T Consensus       222 vVV~Ata~dpa~lr~~Apyaa~aiAEyFrd~G~dVLlv~DdLTr~A~A~REisLll~rpPgreaYPgdvFyl---hsrLL  298 (497)
T TIGR03324       222 IVVVTEGNDPPGLQYIAPYAATSIGEHFMEQGRDVLIVYDDLTQHARAYRELSLLLRRPPGREAFPGDIFYV---HSRLL  298 (497)
T ss_pred             EEEEECCCCCHHHHHHHHHHHHHHHHHHHHCCCEEEEEEECHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHH---HHHHH
T ss_conf             799956889989998878999999999996897489999780699999999998648999877889359877---07888


Q ss_pred             HHH-HHC------CCEEEEEEEECCCCCCCCH--HHHHHHHHEEEEEECCC
Q ss_conf             975-307------9789998630366543311--45787753027851555
Q gi|254780334|r  203 QYA-KKN------GVAMVLVGHVTKEGQIAGP--RVIEHMVDAVLYFEGGT  244 (479)
Q Consensus       203 ~~A-K~~------~i~vilighvTK~G~iAGp--~~LeH~VD~vl~~ege~  244 (479)
T Consensus       299 ERA~~l~~~~ggGSiTalpiv-et~~~D~sayIptnvisItDGqI~L~~~L  348 (497)
T TIGR03324       299 ERSTHLNEELGGGSLTALPII-ETEAQNISAYIPTNLISITDGQIYLSPTL  348 (497)
T ss_pred             HHCCCCCCCCCCCCEEEEEEE-ECCCCCCCCCHHHHHHHHCCCEEEECCCH
T ss_conf             732477899999772324799-80288656644542220108679972407