HHsearch alignment for GI: 254780334 and conserved domain: TIGR03324
>TIGR03324 alt_F1F0_F1_al alternate F1F0 ATPase, F1 subunit alpha. A small number of taxonomically diverse prokaryotic species, including Methanosarcina barkeri, have what appears to be a second ATP synthase, in addition to the normal F1F0 ATPase in bacteria and A1A0 ATPase in archaea. These enzymes use ion gradients to synthesize ATP, and in principle may run in either direction. This model represents the F1 alpha subunit of this apparent second ATP synthase.
Probab=97.82 E-value=0.00074 Score=47.67 Aligned_cols=169 Identities=16% Similarity=0.231 Sum_probs=102.7
Q ss_pred CCCCCCCHHHHHHHCCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHCCCCCEEEEECCCCHHHHHHHHHHC---CCCCCC
Q ss_conf 63237812488886598578708999549875188999999999850398199998646304788887520---157751
Q gi|254780334|r 70 SRIQTHIDELDRVTGGGFVRGSVILVGGDPGIGKSTLLMQTAASLAYKKHRITYVSGEEAIGQIRLRAQRL---NTINSS 146 (479)
Q Consensus 70 ~Ri~TGi~eLDrvLGGGl~~Gs~~Li~G~PGvGKSTL~Lqia~~~a~~g~~vlYvS~EEs~~Qi~~Ra~Rl---~~~~~~ 146 (479)
T Consensus 144 epL~TGIkaID~li--PIGrGQRelIigdrgtGKTtla~dtIinqk~~~vicVyvaIGqr~seV~~~v~~l~~~gal~~T 221 (497)
T TIGR03324 144 VPLQTGLKVIDALI--PIGRGQRELILGDRQTGKTAIAIDTILNQKGRNVLCIYCAIGQRASAVAKVVANLREHGAMDYT 221 (497)
T ss_pred CCCCCCHHHHHCCC--CCCCCCEEEEECCCCCCHHHHHHHHHHHCCCCCEEEEEEEEEEEHHHHHHHHHHHHHCCCCCCE
T ss_conf 71002414554246--5567746776458888800889999970456671899997325078799999998748752341
Q ss_pred HHEECCCC---H---------HHHHHHHHHCCCCCEEEECHHHHHHH------------HHHCCCCCCHHHHHHHHHHHH
Q ss_conf 00003478---8---------99999997316982899721687665------------420445563679999999999
Q gi|254780334|r 147 VYIAIETN---V---------EDIIATLITNEKPDLVIIDSIQTLWS------------QTAESSPGTVIQVRTSVQAMI 202 (479)
Q Consensus 147 i~~~~e~~---l---------~~il~~~i~~~~~~~vVIDSIQtl~~------------~~~~s~~GsvsQvre~~~~L~ 202 (479)
T Consensus 222 vVV~Ata~dpa~lr~~Apyaa~aiAEyFrd~G~dVLlv~DdLTr~A~A~REisLll~rpPgreaYPgdvFyl---hsrLL 298 (497)
T TIGR03324 222 IVVVTEGNDPPGLQYIAPYAATSIGEHFMEQGRDVLIVYDDLTQHARAYRELSLLLRRPPGREAFPGDIFYV---HSRLL 298 (497)
T ss_pred EEEEECCCCCHHHHHHHHHHHHHHHHHHHHCCCEEEEEEECHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHH---HHHHH
T ss_conf 799956889989998878999999999996897489999780699999999998648999877889359877---07888
Q ss_pred HHH-HHC------CCEEEEEEEECCCCCCCCH--HHHHHHHHEEEEEECCC
Q ss_conf 975-307------9789998630366543311--45787753027851555
Q gi|254780334|r 203 QYA-KKN------GVAMVLVGHVTKEGQIAGP--RVIEHMVDAVLYFEGGT 244 (479)
Q Consensus 203 ~~A-K~~------~i~vilighvTK~G~iAGp--~~LeH~VD~vl~~ege~ 244 (479)
T Consensus 299 ERA~~l~~~~ggGSiTalpiv-et~~~D~sayIptnvisItDGqI~L~~~L 348 (497)
T TIGR03324 299 ERSTHLNEELGGGSLTALPII-ETEAQNISAYIPTNLISITDGQIYLSPTL 348 (497)
T ss_pred HHCCCCCCCCCCCCEEEEEEE-ECCCCCCCCCHHHHHHHHCCCEEEECCCH
T ss_conf 732477899999772324799-80288656644542220108679972407