HHsearch alignment for GI: 254780334 and conserved domain: TIGR03608
>TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group. A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins.
Probab=97.82 E-value=0.00024 Score=51.20 Aligned_cols=121 Identities=19% Similarity=0.359 Sum_probs=66.2
Q ss_pred CCCCCCEEEEECCCCCCHHHHHHHHHHHHHCCCCCEEEEECCC----CHHH-HHHHHHHCCCCCCCHHEECCCC-HHHH-
Q ss_conf 8578708999549875188999999999850398199998646----3047-8888752015775100003478-8999-
Q gi|254780334|r 86 GFVRGSVILVGGDPGIGKSTLLMQTAASLAYKKHRITYVSGEE----AIGQ-IRLRAQRLNTINSSVYIAIETN-VEDI- 158 (479)
Q Consensus 86 Gl~~Gs~~Li~G~PGvGKSTL~Lqia~~~a~~g~~vlYvS~EE----s~~Q-i~~Ra~Rl~~~~~~i~~~~e~~-l~~i- 158 (479)
T Consensus 20 ~i~~Ge~~~i~GpSGsGKSTLL~~i-~gl~~p~sG~i~~~g~~~~~~~~~~~~~~rr~~iG~VfQ~~~L~~~ltV~eNi~ 98 (206)
T TIGR03608 20 TIEKGKMVAIVGESGSGKSTLLNII-GLLEKPDSGQVYLNGQETPPINSKKASKFRREKLGYLFQNFALIENETVEENLD 98 (206)
T ss_pred EECCCCEEEEECCCCCCHHHHHHHH-HCCCCCCCEEEEECCEECCCCCHHHHHHHHHCCEEEECCCCCCCCCCCHHHHHH
T ss_conf 9869989999879997099999999-759998975999999999989988999998658899857987679891999999
Q ss_pred ----------------------------------------------HHHHHHCCCCCEEEECHHHHHHHHHHCCCCCCHH
Q ss_conf ----------------------------------------------9999731698289972168766542044556367
Q gi|254780334|r 159 ----------------------------------------------IATLITNEKPDLVIIDSIQTLWSQTAESSPGTVI 192 (479)
Q Consensus 159 ----------------------------------------------l~~~i~~~~~~~vVIDSIQtl~~~~~~s~~Gsvs 192 (479)
T Consensus 99 l~l~~~~~~~~~~~~~~~~~L~~vgl~~~~~~~p~~LSGGe~QRVAIARAL-~~~P~illaDEPT----~~LD~~----- 168 (206)
T TIGR03608 99 LALKYSKLSKKEKREKKKEALEKVGLNLKLKQKIYELSGGEQQRVALARAI-LKPSELILADEPT----GSLDPK----- 168 (206)
T ss_pred HHHHHCCCCHHHHHHHHHHHHHHCCCCHHHHCCCHHCCHHHHHHHHHHHHH-HCCCCEEEECCCC----CCCCHH-----
T ss_conf 999865999999999999999986990565299244486999999999998-2499999963998----778999-----
Q ss_pred HHHHHHHHHHHHHHHCCCEEEEEEEE
Q ss_conf 99999999999753079789998630
Q gi|254780334|r 193 QVRTSVQAMIQYAKKNGVAMVLVGHV 218 (479)
Q Consensus 193 Qvre~~~~L~~~AK~~~i~vilighv 218 (479)
T Consensus 169 ~~~~i~~ll~~l~~~-g~tii~vTHd 193 (206)
T TIGR03608 169 NRDEVLDLLLELNDE-GKTIIIVTHD 193 (206)
T ss_pred HHHHHHHHHHHHHHC-CCEEEEECCC
T ss_conf 999999999999867-9999998987