HHsearch alignment for GI: 254780334 and conserved domain: cd01120

>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.

Probab=99.94  E-value=2.1e-25  Score=204.91  Aligned_cols=150  Identities=25%  Similarity=0.348  Sum_probs=130.2

Q ss_pred             EEEEECCCCCCHHHHHHHHHHHHHCCCCCEEEEECCCCHHHHHHHHHHCC--CCCCCHHEECCCCHHH-------HHHHH
Q ss_conf             89995498751889999999998503981999986463047888875201--5775100003478899-------99999
Q gi|254780334|r   92 VILVGGDPGIGKSTLLMQTAASLAYKKHRITYVSGEEAIGQIRLRAQRLN--TINSSVYIAIETNVED-------IIATL  162 (479)
Q Consensus        92 ~~Li~G~PGvGKSTL~Lqia~~~a~~g~~vlYvS~EEs~~Qi~~Ra~Rl~--~~~~~i~~~~e~~l~~-------il~~~  162 (479)
T Consensus         1 ~~li~g~~g~GKttl~~~~~~~~~~~~~~~~~~~~ee~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (165)
T cd01120           1 LILVFGPTGSGKTTLALQLALNIATKGGKVVYVDIEEEIEELTERLIGESLKGALDNLIIVFATADDPAAARLLSKAERL   80 (165)
T ss_pred             CEEEECCCCCCHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHHHHHHHCCCCCCEEEEEECCCCCCHHHHHHHHHHHH
T ss_conf             98999899998999999999998763997999986664489999999862246713079993599976999999999999


Q ss_pred             HHCCCCCEEEECHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEEEECCC-----CCCCCHHHHHHHHHEE
Q ss_conf             73169828997216876654204455636799999999999753079789998630366-----5433114578775302
Q gi|254780334|r  163 ITNEKPDLVIIDSIQTLWSQTAESSPGTVIQVRTSVQAMIQYAKKNGVAMVLVGHVTKE-----GQIAGPRVIEHMVDAV  237 (479)
Q Consensus       163 i~~~~~~~vVIDSIQtl~~~~~~s~~GsvsQvre~~~~L~~~AK~~~i~vilighvTK~-----G~iAGp~~LeH~VD~v  237 (479)
T Consensus        81 ~~~~~~vliiiDSit~~~~a~~e~~~g~~~~v~~~~~~L~~~Ak~~~itvi~i~~v~~d~~~~~~~~~g~~~l~~~~d~~  160 (165)
T cd01120          81 RERGGDDLIILDELTRLVRALREIREGYPGELDEELRELLERARKGGVTVIFTLQVPSGDKGDPRLTRGAQNLEDIADTV  160 (165)
T ss_pred             HHCCCCEEEEEECHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEEEEECCCCCCCCCCCHHHHHHHHCCEE
T ss_conf             98699779999288998877400158867899999999999997798289999984337789977253888883642669


Q ss_pred             EEEE
Q ss_conf             7851
Q gi|254780334|r  238 LYFE  241 (479)
Q Consensus       238 l~~e  241 (479)
T Consensus       161 i~L~  164 (165)
T cd01120         161 IVLS  164 (165)
T ss_pred             EEEE
T ss_conf             9983