HHsearch alignment for GI: 254780334 and conserved domain: cd01121

>cd01121 Sms Sms (bacterial radA) DNA repair protein. This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules.
Probab=100.00  E-value=0  Score=1018.96  Aligned_cols=372  Identities=55%  Similarity=0.921  Sum_probs=357.1

Q ss_pred             EEECCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCEECCCCCCCCCCCCCCCCHHHHHHHCCCC
Q ss_conf             89876756363007717888986707988524776555444445556656403133345566632378124888865985
Q gi|254780334|r    8 YFCQSCGEIHSRWIGKCDSCNAWNTIIEDSSRKESDQRFSKTIKQGHSISLFMLSEESIEEESRIQTHIDELDRVTGGGF   87 (479)
Q Consensus         8 y~C~~Cg~~~~kW~G~Cp~C~~Wnt~~e~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~Ri~TGi~eLDrvLGGGl   87 (479)
T Consensus         1 y~C~~CG~~~~kW~GkCp~Cg~WnTl~E~~~~~~~~~~~~-~~~~~~~~~~~~l~~v~~~~~~R~~Tgi~ElDRVLGGGi   79 (372)
T cd01121           1 YVCSECGYVSPKWLGKCPECGEWNTLVEEIEPSSSSGSGG-RSSGGSASKVIPLSDIEAEEEERIPTGIEELDRVLGGGL   79 (372)
T ss_pred             CCCCCCCCCCCCCCEECCCCCCCCCEEEEECCCCCCCCCC-CCCCCCCCCCEEHHHCCCCCCCCCCCCCHHHHHHHCCCC
T ss_conf             9998899978872426979998643899963678777666-556777677557344365655544478366654005773


Q ss_pred             CCCCEEEEECCCCCCHHHHHHHHHHHHHCCCCCEEEEECCCCHHHHHHHHHHCCCCCCCHHEECCCCHHHHHHHHHHCCC
Q ss_conf             78708999549875188999999999850398199998646304788887520157751000034788999999973169
Q gi|254780334|r   88 VRGSVILVGGDPGIGKSTLLMQTAASLAYKKHRITYVSGEEAIGQIRLRAQRLNTINSSVYIAIETNVEDIIATLITNEK  167 (479)
Q Consensus        88 ~~Gs~~Li~G~PGvGKSTL~Lqia~~~a~~g~~vlYvS~EEs~~Qi~~Ra~Rl~~~~~~i~~~~e~~l~~il~~~i~~~~  167 (479)
T Consensus        80 VpGSvvLlgGePGIGKSTLLLQia~~la~~~~~vLYvSGEES~~QIk~RA~RLg~~~~~l~l~set~le~Il~~-i~~~k  158 (372)
T cd01121          80 VPGSVILIGGDPGIGKSTLLLQVAARLAKRGGKVLYVSGEESPEQIKLRADRLGISTENLYLLAETNLEDILAS-IEELK  158 (372)
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEECHHHHHHHHHHHHHHCCCCCCCEEEECCCHHHHHHH-HHHHC
T ss_conf             06717998259988688999999999986399389982456789999899985878877278843569999999-99719


Q ss_pred             CCEEEECHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEEEECCCCCCCCHHHHHHHHHEEEEEECCCCCC
Q ss_conf             82899721687665420445563679999999999975307978999863036654331145787753027851555666
Q gi|254780334|r  168 PDLVIIDSIQTLWSQTAESSPGTVIQVRTSVQAMIQYAKKNGVAMVLVGHVTKEGQIAGPRVIEHMVDAVLYFEGGTRNT  247 (479)
Q Consensus       168 ~~~vVIDSIQtl~~~~~~s~~GsvsQvre~~~~L~~~AK~~~i~vilighvTK~G~iAGp~~LeH~VD~vl~~ege~~~~  247 (479)
T Consensus       159 P~~lIIDSIQT~~~~~~~s~pGsvsQVReca~~L~~~AK~~~i~~~lVGHVTK~G~iAGPkvLEHmVDtVl~fEg---d~  235 (372)
T cd01121         159 PDLVIIDSIQTVYSSELTSAPGSVSQVRECTAELMRFAKERNIPIFIVGHVTKEGSIAGPKVLEHMVDTVLYFEG---DR  235 (372)
T ss_pred             CCEEEEECHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEEEECCCCCCCCCHHHEEEEEEEEEECC---CC
T ss_conf             988999562202037767799878999999999999998619739999876268863774031002136887515---77


Q ss_pred             CCCCEEEEEEEECCCCCCCEEEEEECCCCCEEECCHHHHHHCCCCCCCCCEEEEEEECCCCCCEEEEEEEECCCCCCCCE
Q ss_conf             54421567632025676512799851566311014045551147667673489973048974115533101157787724
Q gi|254780334|r  248 QYDYRILRSVKNRFGPTDEIGVFEMSDKGLQEVSDPSKIFLSDRDSTSPGTAVFAGIEGTRALLVEIQSLVVPTSLGMPR  327 (479)
Q Consensus       248 ~~~~R~Lr~~KNRfG~t~e~gvf~m~~~Gl~~v~~ps~~fl~~~~~~~~Gs~v~~~~eG~r~~lvEvQALv~~~~~~~p~  327 (479)
T Consensus       236 ~~~~R~LR~~KNRFG~t~EiGvFeM~~~GL~~V~nPS~~Fl~~~~~~~~Gs~v~~~~EGsRpllvEiQALv~~s~~~~Pr  315 (372)
T cd01121         236 HSEYRILRSVKNRFGSTNELGVFEMRENGLREVSNPSELFLSEREEDVPGSAVTVVMEGSRPLLVEVQALVSPTSYANPR  315 (372)
T ss_pred             CCCEEEEEEECCCCCCCCEEEEEEECCCCCEECCCHHHHHHHCCCCCCCCCEEEEEEECCCCEEEEEEECCCCCCCCCCC
T ss_conf             65503567411567775405888731687056368569886269888886379988740465056622020578889996


Q ss_pred             EEEECCCHHHHHHHHHHHHHHCCCCCCCCHHHEECCCCCCCCCCCCCHHHHHHHHHH
Q ss_conf             776046866655558988751111024622210014561115432587999999997
Q gi|254780334|r  328 RTVVGWDSSRLAMILAVLEARCNIKFGNHDVHLNIAGGYRISEPAADVAVAAALISS  384 (479)
Q Consensus       328 R~~~G~d~~rl~~llAvl~k~~~~~~~~~Di~~nv~gG~~i~~pa~DLaia~ailSs  384 (479)
T Consensus       316 R~~~G~d~~Rl~ml~AVlek~~~~~l~~~Dv~vnv~GG~ki~epa~DLAv~~Ai~SS  372 (372)
T cd01121         316 RVAVGFDPNRLSMLLAVLEKRLGLPLADQDVFVNVAGGLKITEPAADLAVALAIVSS  372 (372)
T ss_pred             EEECCCCHHHHHHHHHHHHHHCCCCCCCCCEEEECCCCEECCCCHHHHHHHHHHHCC
T ss_conf             567367888899999999997399866776899867886636836889999998729