HHsearch alignment for GI: 254780334 and conserved domain: cd01122
>cd01122 GP4d_helicase GP4d_helicase is a homohexameric 5'-3' helicases. Helicases couple NTP hydrolysis to the unwinding of nucleic acid duplexes into their component strands.
Probab=99.93 E-value=1.9e-23 Score=190.57 Aligned_cols=204 Identities=21% Similarity=0.346 Sum_probs=152.5
Q ss_pred CCCCCCCCCHHHHHHHCCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHC-CCCCEEEEECCCCHHHHHHHHHHC--CCC-
Q ss_conf 6663237812488886598578708999549875188999999999850-398199998646304788887520--157-
Q gi|254780334|r 68 EESRIQTHIDELDRVTGGGFVRGSVILVGGDPGIGKSTLLMQTAASLAY-KKHRITYVSGEEAIGQIRLRAQRL--NTI- 143 (479)
Q Consensus 68 ~~~Ri~TGi~eLDrvLGGGl~~Gs~~Li~G~PGvGKSTL~Lqia~~~a~-~g~~vlYvS~EEs~~Qi~~Ra~Rl--~~~- 143 (479)
T Consensus 9 ~~~~~~~pf~~LD~~~-~Gl~~GeL~viaarpg~GKT~f~~~~a~~~~~~~g~~vl~~SlEm~~~~~~~Rlls~~~g~~~ 87 (271)
T cd01122 9 SNEEVWWPFPVLNKLT-KGLRKGELIILTAGTGVGKTTFLREYALDLITQHGVRVGTISLEEPVVRTARRLLGQYAGKRL 87 (271)
T ss_pred CCCCCCCCCHHHHHHH-CCCCCCCEEEEEECCCCCHHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHHHHHHHHCCCH
T ss_conf 7556658816688873-799998089999689986999999999999997699089997049999999999999829971
Q ss_pred -----------------------CCCHHEEC---CCCHHHH---HHHHHHCCCCCEEEECHHHHHHHHHHCCCCCCHHHH
Q ss_conf -----------------------75100003---4788999---999973169828997216876654204455636799
Q gi|254780334|r 144 -----------------------NSSVYIAI---ETNVEDI---IATLITNEKPDLVIIDSIQTLWSQTAESSPGTVIQV 194 (479)
Q Consensus 144 -----------------------~~~i~~~~---e~~l~~i---l~~~i~~~~~~~vVIDSIQtl~~~~~~s~~GsvsQv 194 (479)
T Consensus 88 ~~~~~~~~~~~e~~~~~~~~~~~~~~l~i~d~~~~~~~~~i~~~ir~~~~~~~~~~vvIDylqll~~~~~~~-~d~~~~i 166 (271)
T cd01122 88 HLPDTVFIYTLEEFDAAFDEFEGTGRLFMYDSFGEYSMDSVLEKVRYMAVSHGIQHIIIDNLSIMVSDERAS-GDERKAL 166 (271)
T ss_pred HHCCCCCCCHHHHHHHHHHHHCCCCCEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEEHHHHCCCCCCCC-CCHHHHH
T ss_conf 103446778099999999997079980887899998899999999999982899889983178503678677-3189999
Q ss_pred HHHHHHHHHHHHHCCCEEEEEEEECCCC--------------CCCCHHHHHHHHHEEEEEECC--CCCCCCCCEEEEEEE
Q ss_conf 9999999997530797899986303665--------------433114578775302785155--566654421567632
Q gi|254780334|r 195 RTSVQAMIQYAKKNGVAMVLVGHVTKEG--------------QIAGPRVIEHMVDAVLYFEGG--TRNTQYDYRILRSVK 258 (479)
Q Consensus 195 re~~~~L~~~AK~~~i~vilighvTK~G--------------~iAGp~~LeH~VD~vl~~ege--~~~~~~~~R~Lr~~K 258 (479)
T Consensus 167 ~~i~~~Lk~lAke~~v~Vi~lsQlnR~~~~~~~~~~~~~~lsDlrgSg~ieq~AD~vi~l~R~~~~~~~~~~~~~l~v~K 246 (271)
T cd01122 167 DEIMTKLRGFATEHGIHITLVSHLRRPDGDKTHEEGGEVSLSDFRGSAAIGQLADNVIALERNQQAELDERNTTYLRILK 246 (271)
T ss_pred HHHHHHHHHHHHHHCCCEEEEECCCCCCCCCCCCCCCCCCHHHHCCCHHHHHHCCEEEEEEECCCCCCCCCCEEEEEEEE
T ss_conf 99999999999997997799952676535556566877566661243012532879999975576666789828999993
Q ss_pred ECC-CCCCCEEEEEEC
Q ss_conf 025-676512799851
Q gi|254780334|r 259 NRF-GPTDEIGVFEMS 273 (479)
Q Consensus 259 NRf-G~t~e~gvf~m~ 273 (479)
T Consensus 247 nR~~G~tG~~~~l~y~ 262 (271)
T cd01122 247 NRFTGGTGVAGPLEYD 262 (271)
T ss_pred CCCCCCCCCEEEEEEE
T ss_conf 6898999888988996