HHsearch alignment for GI: 254780334 and conserved domain: cd01393

>cd01393 recA_like RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange. While prokaryotes have a single RecA protein, eukaryotes have multiple RecA homologs such as Rad51, DMC1 and Rad55/57. Archaea have the RecA-like homologs radA and radB.
Probab=99.92  E-value=2.5e-23  Score=189.77  Aligned_cols=193  Identities=25%  Similarity=0.352  Sum_probs=145.6

Q ss_pred             CCCCCHHHHHHHCCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHCCC------CCEEEEECCCCHHHHHHHHHHCCCC--
Q ss_conf             23781248888659857870899954987518899999999985039------8199998646304788887520157--
Q gi|254780334|r   72 IQTHIDELDRVTGGGFVRGSVILVGGDPGIGKSTLLMQTAASLAYKK------HRITYVSGEEAIGQIRLRAQRLNTI--  143 (479)
Q Consensus        72 i~TGi~eLDrvLGGGl~~Gs~~Li~G~PGvGKSTL~Lqia~~~a~~g------~~vlYvS~EEs~~Qi~~Ra~Rl~~~--  143 (479)
T Consensus         1 isTG~~~lD~~LgGGip~G~ItEi~G~~gsGKT~l~lqla~~~q~~~~~~~~~g~vvyIDtE~~f~--~~rl~~i~~~~~   78 (226)
T cd01393           1 ISTGSKALDELLGGGIPTGRITEIFGEFGSGKTQLCLQLAVEAQLPGELGGLEGKVVYIDTEGAFR--PERLVQLAVRFG   78 (226)
T ss_pred             CCCCCHHHHHHHCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHCCCCCCCCCCEEEEEECCCCCC--HHHHHHHHHHHC
T ss_conf             988747899885799888839999999999899999999999854221169996199995577531--999999987603


Q ss_pred             ------CCCHHEECCCCHHHHHHH------HHHCCCCCEEEECHHHHHHHHHHCCCCCCH---HHHHHHHHHHHHHHHHC
Q ss_conf             ------751000034788999999------973169828997216876654204455636---79999999999975307
Q gi|254780334|r  144 ------NSSVYIAIETNVEDIIAT------LITNEKPDLVIIDSIQTLWSQTAESSPGTV---IQVRTSVQAMIQYAKKN  208 (479)
Q Consensus       144 ------~~~i~~~~e~~l~~il~~------~i~~~~~~~vVIDSIQtl~~~~~~s~~Gsv---sQvre~~~~L~~~AK~~  208 (479)
T Consensus        79 ~~~~~~l~~i~~~~~~~~e~~~~~~~~l~~~~~~~~v~liViDSi~al~r~~~~~~~~~~~r~~~l~~~~~~L~~la~~~  158 (226)
T cd01393          79 LDPEEVLDNIYVARPYNGEQQLEIVEELERIMSSGRVDLVVVDSVAALFRKEFIGRGMLAERARLLSQALRKLLRLADKF  158 (226)
T ss_pred             CCHHHHHHHEEEECCCCHHHHHHHHHHHHHHHHCCCCEEEEEECCCEECCHHHCCCCCHHHHHHHHHHHHHHHHHHHHHC
T ss_conf             26677643336843799999999999999875247842899932200111444276207899999999999999999984


Q ss_pred             CCEEEEEEEEC-CCCC-------CCCHHHHHHHHHEEEEEECCCCCCCCCCEEEEEEEECCCCCCCE
Q ss_conf             97899986303-6654-------33114578775302785155566654421567632025676512
Q gi|254780334|r  209 GVAMVLVGHVT-KEGQ-------IAGPRVIEHMVDAVLYFEGGTRNTQYDYRILRSVKNRFGPTDEI  267 (479)
Q Consensus       209 ~i~vilighvT-K~G~-------iAGp~~LeH~VD~vl~~ege~~~~~~~~R~Lr~~KNRfG~t~e~  267 (479)
T Consensus       159 ~~avv~tNQv~~~i~~~~~~~~~p~gG~~w~~~~~~Ri~l~k~-~~~~~~~r~~~~~k~p~~p~~~~  224 (226)
T cd01393         159 NVAVVFTNQVRAKVDVMFGDPETPAGGNALAHASTTRLDLRKG-RGIIGERRIAKVVKSPALPEAEA  224 (226)
T ss_pred             CCEEEEECEEEECCCCCCCCCCCCCCHHHHHHHCEEEEEEEEC-CCCCCCEEEEEEEECCCCCCCCC
T ss_conf             9799996811781578789988787636646002699999966-88878879999998989987668