HHsearch alignment for GI: 254780334 and conserved domain: cd01394
>cd01394 radB RadB. The archaeal protein radB shares similarity radA, the archaeal functional homologue to the bacterial RecA. The precise function of radB is unclear.
Probab=100.00 E-value=0 Score=363.51 Aligned_cols=203 Identities=27% Similarity=0.393 Sum_probs=173.0
Q ss_pred CCCCCHHHHHHHCCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHCCCCCEEEEECCC-CHHHHHHHH-HHCCCCCCCHHE
Q ss_conf 237812488886598578708999549875188999999999850398199998646-304788887-520157751000
Q gi|254780334|r 72 IQTHIDELDRVTGGGFVRGSVILVGGDPGIGKSTLLMQTAASLAYKKHRITYVSGEE-AIGQIRLRA-QRLNTINSSVYI 149 (479)
Q Consensus 72 i~TGi~eLDrvLGGGl~~Gs~~Li~G~PGvGKSTL~Lqia~~~a~~g~~vlYvS~EE-s~~Qi~~Ra-~Rl~~~~~~i~~ 149 (479)
T Consensus 1 IsTG~~~lD~vLgGGi~~G~it~i~G~pG~GKStl~lq~a~~~~~~g~~v~YidtE~~~~er~~qi~~~~~~~~~~~i~v 80 (218)
T cd01394 1 LPTGCKGLDELLGGGVERGTVTQVYGPPGTGKTNIAIQLAVETAGQGKKVAYIDTEGLSSERFRQIAGDRPERAASSIIV 80 (218)
T ss_pred CCCCCHHHHHHHCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHCCCEEEEEECCCCCCHHHHHHHHHHHHHHHCCCEE
T ss_conf 99880789998569987887999989999849999999999986369869999665567699999987536665305146
Q ss_pred ECCCCHHHHHHH---H--HHCCCCCEEEECHHHHHHHHHHCCCCCCHHHHHHHHHH---HHHHHHHCCCEEEEEEEECCC
Q ss_conf 034788999999---9--73169828997216876654204455636799999999---999753079789998630366
Q gi|254780334|r 150 AIETNVEDIIAT---L--ITNEKPDLVIIDSIQTLWSQTAESSPGTVIQVRTSVQA---MIQYAKKNGVAMVLVGHVTKE 221 (479)
Q Consensus 150 ~~e~~l~~il~~---~--i~~~~~~~vVIDSIQtl~~~~~~s~~GsvsQvre~~~~---L~~~AK~~~i~vilighvTK~ 221 (479)
T Consensus 81 ~~~~~~~~~~~~i~~~~~~~~~~~~lvViDSi~tl~~~e~~~~~~~~~~~r~l~~~~~~L~~~Ak~~~~~vil~nqVt~~ 160 (218)
T cd01394 81 FEPMDFNEQGRAIQETETFADEKVDLVVVDSATALYRLELGDDDTTIKNYRELAKQLTFLLWLARKHDVAVVITNQVYSD 160 (218)
T ss_pred ECCCCHHHHHHHHHHHHHHHHCCCCEEEEECCHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEEEEEE
T ss_conf 26787688999999999764147729999140455455406896479999999999999999987669889999215884
Q ss_pred CC-----CCCHHHHHHHHHEEEEEECCCCCCCCCCEEEEEEEECCCCCCCEEEEEECCCCCE
Q ss_conf 54-----3311457877530278515556665442156763202567651279985156631
Q gi|254780334|r 222 GQ-----IAGPRVIEHMVDAVLYFEGGTRNTQYDYRILRSVKNRFGPTDEIGVFEMSDKGLQ 278 (479)
Q Consensus 222 G~-----iAGp~~LeH~VD~vl~~ege~~~~~~~~R~Lr~~KNRfG~t~e~gvf~m~~~Gl~ 278 (479)
T Consensus 161 ~~~~~~~p~GG~~LeH~vd~vl~~e~~---~-~~~R~~~~~Knr~gp~~e~~~F~mt~~Gle 218 (218)
T cd01394 161 VGSGSVRPLGGHTLEHWSKVILRLEKL---R-VGTRRAVLEKHRFRPEGSSVYFRITDKGIE 218 (218)
T ss_pred CCCCCCCCCCCHHHHHHCCEEEEEECC---C-CCEEEEEEEECCCCCCCCEEEEEECCCCCC
T ss_conf 577756556720414110289999848---8-967999997589999886899997288879