HHsearch alignment for GI: 254780334 and conserved domain: cd03225
>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=97.97 E-value=0.00027 Score=50.91 Aligned_cols=136 Identities=21% Similarity=0.317 Sum_probs=74.3
Q ss_pred CCCCCCEEEEECCCCCCHHHHHHHHHHHHHCCCCCEEEEECCCC-HHHHHHHHHHCCCCCCC--HHEECCCCHHHH----
Q ss_conf 85787089995498751889999999998503981999986463-04788887520157751--000034788999----
Q gi|254780334|r 86 GFVRGSVILVGGDPGIGKSTLLMQTAASLAYKKHRITYVSGEEA-IGQIRLRAQRLNTINSS--VYIAIETNVEDI---- 158 (479)
Q Consensus 86 Gl~~Gs~~Li~G~PGvGKSTL~Lqia~~~a~~g~~vlYvS~EEs-~~Qi~~Ra~Rl~~~~~~--i~~~~e~~l~~i---- 158 (479)
T Consensus 23 ~i~~Gei~~iiG~nGaGKSTLlk~i~Gl~~p~~G~-I~~~g~~i~~~~~~~~~~~ig~v~Q~p~~~~~~~tv~e~i~~~~ 101 (211)
T cd03225 23 TIKKGEFVLIVGPNGSGKSTLLRLLNGLLGPTSGE-VLVDGKDLTKLSLKELRRKVGLVFQNPDDQFFGPTVEEEVAFGL 101 (211)
T ss_pred EECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCC-EEECCEECCCCCHHHHHCCEEEEEECCHHHCCCCCHHHHHHHHH
T ss_conf 88499799998899998999999996467798887-78999999979989984038999778325305586999999999
Q ss_pred -------------------------------------------HHHHHHCCCCCEEEECHHHHHHHHHHCCCCCCHHHHH
Q ss_conf -------------------------------------------9999731698289972168766542044556367999
Q gi|254780334|r 159 -------------------------------------------IATLITNEKPDLVIIDSIQTLWSQTAESSPGTVIQVR 195 (479)
Q Consensus 159 -------------------------------------------l~~~i~~~~~~~vVIDSIQtl~~~~~~s~~GsvsQvr 195 (479)
T Consensus 102 ~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSGGqkQrv~iAra-l~~~P~ililDEPT----sgLD--~~~---~~ 171 (211)
T cd03225 102 ENLGLPEEEIEERVEEALELVGLEGLRDRSPFTLSGGQKQRVAIAGV-LAMDPDILLLDEPT----AGLD--PAG---RR 171 (211)
T ss_pred HHCCCCHHHHHHHHHHHHHHCCCHHHHHCCHHHCCHHHHHHHHHHHH-HHCCCCEEEEECCC----CCCC--HHH---HH
T ss_conf 98699999999999999998699466638954599989999999999-97599999997985----5589--999---99
Q ss_pred HHHHHHHHHHHHCCCEEEEEEEECCCCCCCCHHHHHHHHHEEEEEE
Q ss_conf 9999999975307978999863036654331145787753027851
Q gi|254780334|r 196 TSVQAMIQYAKKNGVAMVLVGHVTKEGQIAGPRVIEHMVDAVLYFE 241 (479)
Q Consensus 196 e~~~~L~~~AK~~~i~vilighvTK~G~iAGp~~LeH~VD~vl~~e 241 (479)
T Consensus 172 ~i~~~l~~l~~-~g~tii~itHd--------l~~~~~~~dri~~m~ 208 (211)
T cd03225 172 ELLELLKKLKA-EGKTIIIVTHD--------LDLLLELADRVIVLE 208 (211)
T ss_pred HHHHHHHHHHH-CCCEEEEEECC--------HHHHHHHCCEEEEEE
T ss_conf 99999999997-89999999259--------999999799999982