HHsearch alignment for GI: 254780334 and conserved domain: cd03225

>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=97.97  E-value=0.00027  Score=50.91  Aligned_cols=136  Identities=21%  Similarity=0.317  Sum_probs=74.3

Q ss_pred             CCCCCCEEEEECCCCCCHHHHHHHHHHHHHCCCCCEEEEECCCC-HHHHHHHHHHCCCCCCC--HHEECCCCHHHH----
Q ss_conf             85787089995498751889999999998503981999986463-04788887520157751--000034788999----
Q gi|254780334|r   86 GFVRGSVILVGGDPGIGKSTLLMQTAASLAYKKHRITYVSGEEA-IGQIRLRAQRLNTINSS--VYIAIETNVEDI----  158 (479)
Q Consensus        86 Gl~~Gs~~Li~G~PGvGKSTL~Lqia~~~a~~g~~vlYvS~EEs-~~Qi~~Ra~Rl~~~~~~--i~~~~e~~l~~i----  158 (479)
T Consensus        23 ~i~~Gei~~iiG~nGaGKSTLlk~i~Gl~~p~~G~-I~~~g~~i~~~~~~~~~~~ig~v~Q~p~~~~~~~tv~e~i~~~~  101 (211)
T cd03225          23 TIKKGEFVLIVGPNGSGKSTLLRLLNGLLGPTSGE-VLVDGKDLTKLSLKELRRKVGLVFQNPDDQFFGPTVEEEVAFGL  101 (211)
T ss_pred             EECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCC-EEECCEECCCCCHHHHHCCEEEEEECCHHHCCCCCHHHHHHHHH
T ss_conf             88499799998899998999999996467798887-78999999979989984038999778325305586999999999


Q ss_pred             -------------------------------------------HHHHHHCCCCCEEEECHHHHHHHHHHCCCCCCHHHHH
Q ss_conf             -------------------------------------------9999731698289972168766542044556367999
Q gi|254780334|r  159 -------------------------------------------IATLITNEKPDLVIIDSIQTLWSQTAESSPGTVIQVR  195 (479)
Q Consensus       159 -------------------------------------------l~~~i~~~~~~~vVIDSIQtl~~~~~~s~~GsvsQvr  195 (479)
T Consensus       102 ~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSGGqkQrv~iAra-l~~~P~ililDEPT----sgLD--~~~---~~  171 (211)
T cd03225         102 ENLGLPEEEIEERVEEALELVGLEGLRDRSPFTLSGGQKQRVAIAGV-LAMDPDILLLDEPT----AGLD--PAG---RR  171 (211)
T ss_pred             HHCCCCHHHHHHHHHHHHHHCCCHHHHHCCHHHCCHHHHHHHHHHHH-HHCCCCEEEEECCC----CCCC--HHH---HH
T ss_conf             98699999999999999998699466638954599989999999999-97599999997985----5589--999---99


Q ss_pred             HHHHHHHHHHHHCCCEEEEEEEECCCCCCCCHHHHHHHHHEEEEEE
Q ss_conf             9999999975307978999863036654331145787753027851
Q gi|254780334|r  196 TSVQAMIQYAKKNGVAMVLVGHVTKEGQIAGPRVIEHMVDAVLYFE  241 (479)
Q Consensus       196 e~~~~L~~~AK~~~i~vilighvTK~G~iAGp~~LeH~VD~vl~~e  241 (479)
T Consensus       172 ~i~~~l~~l~~-~g~tii~itHd--------l~~~~~~~dri~~m~  208 (211)
T cd03225         172 ELLELLKKLKA-EGKTIIIVTHD--------LDLLLELADRVIVLE  208 (211)
T ss_pred             HHHHHHHHHHH-CCCEEEEEECC--------HHHHHHHCCEEEEEE
T ss_conf             99999999997-89999999259--------999999799999982