HHsearch alignment for GI: 254780334 and conserved domain: cd03226

>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=97.70  E-value=0.0016  Score=45.28  Aligned_cols=134  Identities=19%  Similarity=0.297  Sum_probs=71.6

Q ss_pred             CCCCCCEEEEECCCCCCHHHHHHHHHHHHHCCCCCEEEEECCCCHHHHHHHHHHCCCCCCCH--HEECCC----------
Q ss_conf             85787089995498751889999999998503981999986463047888875201577510--000347----------
Q gi|254780334|r   86 GFVRGSVILVGGDPGIGKSTLLMQTAASLAYKKHRITYVSGEEAIGQIRLRAQRLNTINSSV--YIAIET----------  153 (479)
Q Consensus        86 Gl~~Gs~~Li~G~PGvGKSTL~Lqia~~~a~~g~~vlYvS~EEs~~Qi~~Ra~Rl~~~~~~i--~~~~e~----------  153 (479)
T Consensus        22 ~i~~Gei~~iiG~nGaGKSTLl~~i~Gl~~p~~G~-I~~~g~~~~~--~~~~~~ig~v~Q~~~~~l~~~tv~~~l~~~~~   98 (205)
T cd03226          22 DLYAGEIIALTGKNGAGKTTLAKILAGLIKESSGS-ILLNGKPIKA--KERRKSIGYVMQDVDYQLFTDSVREELLLGLK   98 (205)
T ss_pred             EECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCE-EEECCEECCH--HHHHCCEEEEEECCCCCCCHHHHHHHHHHCCC
T ss_conf             88699899998899998999999995685777873-8999999965--78744489996278644206479999970487


Q ss_pred             -------CHHHH--------------------------HHHHHHCCCCCEEEECHHHHHHHHHHCCCCCCHHHHHHHHHH
Q ss_conf             -------88999--------------------------999973169828997216876654204455636799999999
Q gi|254780334|r  154 -------NVEDI--------------------------IATLITNEKPDLVIIDSIQTLWSQTAESSPGTVIQVRTSVQA  200 (479)
Q Consensus       154 -------~l~~i--------------------------l~~~i~~~~~~~vVIDSIQtl~~~~~~s~~GsvsQvre~~~~  200 (479)
T Consensus        99 ~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSGGqkQrv~iA~a-L~~~P~illLDEPt----~gLD~-----~~~~~i~~l  168 (205)
T cd03226          99 ELDAGNEQAETVLKDLDLYALKERHPLSLSGGQKQRLAIAAA-LLSGKDLLIFDEPT----SGLDY-----KNMERVGEL  168 (205)
T ss_pred             CCCCHHHHHHHHHHHCCCCHHHHCCHHHCCHHHHHHHHHHHH-HHCCCCEEEEECCC----CCCCH-----HHHHHHHHH
T ss_conf             856079999999997699235538911289999999999999-97599999997997----65899-----999999999


Q ss_pred             HHHHHHHCCCEEEEEEEECCCCCCCCHHHHHHHHHEEEEEE
Q ss_conf             99975307978999863036654331145787753027851
Q gi|254780334|r  201 MIQYAKKNGVAMVLVGHVTKEGQIAGPRVIEHMVDAVLYFE  241 (479)
Q Consensus       201 L~~~AK~~~i~vilighvTK~G~iAGp~~LeH~VD~vl~~e  241 (479)
T Consensus       169 l~~l~~~-g~tvi~itHd--------l~~~~~~~dri~vl~  200 (205)
T cd03226         169 IRELAAQ-GKAVIVITHD--------YEFLAKVCDRVLLLA  200 (205)
T ss_pred             HHHHHHC-CCEEEEEECC--------HHHHHHHCCEEEEEE
T ss_conf             9999979-9999998039--------899999799999981