HHsearch alignment for GI: 254780334 and conserved domain: cd03226
>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=97.70 E-value=0.0016 Score=45.28 Aligned_cols=134 Identities=19% Similarity=0.297 Sum_probs=71.6
Q ss_pred CCCCCCEEEEECCCCCCHHHHHHHHHHHHHCCCCCEEEEECCCCHHHHHHHHHHCCCCCCCH--HEECCC----------
Q ss_conf 85787089995498751889999999998503981999986463047888875201577510--000347----------
Q gi|254780334|r 86 GFVRGSVILVGGDPGIGKSTLLMQTAASLAYKKHRITYVSGEEAIGQIRLRAQRLNTINSSV--YIAIET---------- 153 (479)
Q Consensus 86 Gl~~Gs~~Li~G~PGvGKSTL~Lqia~~~a~~g~~vlYvS~EEs~~Qi~~Ra~Rl~~~~~~i--~~~~e~---------- 153 (479)
T Consensus 22 ~i~~Gei~~iiG~nGaGKSTLl~~i~Gl~~p~~G~-I~~~g~~~~~--~~~~~~ig~v~Q~~~~~l~~~tv~~~l~~~~~ 98 (205)
T cd03226 22 DLYAGEIIALTGKNGAGKTTLAKILAGLIKESSGS-ILLNGKPIKA--KERRKSIGYVMQDVDYQLFTDSVREELLLGLK 98 (205)
T ss_pred EECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCE-EEECCEECCH--HHHHCCEEEEEECCCCCCCHHHHHHHHHHCCC
T ss_conf 88699899998899998999999995685777873-8999999965--78744489996278644206479999970487
Q ss_pred -------CHHHH--------------------------HHHHHHCCCCCEEEECHHHHHHHHHHCCCCCCHHHHHHHHHH
Q ss_conf -------88999--------------------------999973169828997216876654204455636799999999
Q gi|254780334|r 154 -------NVEDI--------------------------IATLITNEKPDLVIIDSIQTLWSQTAESSPGTVIQVRTSVQA 200 (479)
Q Consensus 154 -------~l~~i--------------------------l~~~i~~~~~~~vVIDSIQtl~~~~~~s~~GsvsQvre~~~~ 200 (479)
T Consensus 99 ~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSGGqkQrv~iA~a-L~~~P~illLDEPt----~gLD~-----~~~~~i~~l 168 (205)
T cd03226 99 ELDAGNEQAETVLKDLDLYALKERHPLSLSGGQKQRLAIAAA-LLSGKDLLIFDEPT----SGLDY-----KNMERVGEL 168 (205)
T ss_pred CCCCHHHHHHHHHHHCCCCHHHHCCHHHCCHHHHHHHHHHHH-HHCCCCEEEEECCC----CCCCH-----HHHHHHHHH
T ss_conf 856079999999997699235538911289999999999999-97599999997997----65899-----999999999
Q ss_pred HHHHHHHCCCEEEEEEEECCCCCCCCHHHHHHHHHEEEEEE
Q ss_conf 99975307978999863036654331145787753027851
Q gi|254780334|r 201 MIQYAKKNGVAMVLVGHVTKEGQIAGPRVIEHMVDAVLYFE 241 (479)
Q Consensus 201 L~~~AK~~~i~vilighvTK~G~iAGp~~LeH~VD~vl~~e 241 (479)
T Consensus 169 l~~l~~~-g~tvi~itHd--------l~~~~~~~dri~vl~ 200 (205)
T cd03226 169 IRELAAQ-GKAVIVITHD--------YEFLAKVCDRVLLLA 200 (205)
T ss_pred HHHHHHC-CCEEEEEECC--------HHHHHHHCCEEEEEE
T ss_conf 9999979-9999998039--------899999799999981