HHsearch alignment for GI: 254780334 and conserved domain: cd03228
>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.03 E-value=5.9e-05 Score=55.69 Aligned_cols=134 Identities=19% Similarity=0.282 Sum_probs=78.9
Q ss_pred CCCCCCEEEEECCCCCCHHHHHHHHHHHHHCCCCCEEEEECCCCH-HHHHHHHHHCCCCCCCHHEECCCCHHHH------
Q ss_conf 857870899954987518899999999985039819999864630-4788887520157751000034788999------
Q gi|254780334|r 86 GFVRGSVILVGGDPGIGKSTLLMQTAASLAYKKHRITYVSGEEAI-GQIRLRAQRLNTINSSVYIAIETNVEDI------ 158 (479)
Q Consensus 86 Gl~~Gs~~Li~G~PGvGKSTL~Lqia~~~a~~g~~vlYvS~EEs~-~Qi~~Ra~Rl~~~~~~i~~~~e~~l~~i------ 158 (479)
T Consensus 24 ~i~~Ge~i~ivG~sGsGKSTLl~ll~gl~~p~~G~-I~i~g~~i~~~~~~~~~~~i~~v~Q~~~lf~~tv~eNiLSgGq~ 102 (171)
T cd03228 24 TIKPGEKVAIVGPSGSGKSTLLKLLLRLYDPTSGE-ILIDGVDLRDLDLESLRKNIAYVPQDPFLFSGTIRENILSGGQR 102 (171)
T ss_pred EECCCCEEEEECCCCCHHHHHHHHHHCCCCCCCCE-EEECCEECCCCCHHHHHHHEEEECCCCCCCCCCHHHHCCCHHHH
T ss_conf 98599899999999983999999997677589748-99999998859989986318999666843757799977448899
Q ss_pred ----HHHHHHCCCCCEEEECHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEEEECCCCCCCCHHHHHHHH
Q ss_conf ----9999731698289972168766542044556367999999999997530797899986303665433114578775
Q gi|254780334|r 159 ----IATLITNEKPDLVIIDSIQTLWSQTAESSPGTVIQVRTSVQAMIQYAKKNGVAMVLVGHVTKEGQIAGPRVIEHMV 234 (479)
Q Consensus 159 ----l~~~i~~~~~~~vVIDSIQtl~~~~~~s~~GsvsQvre~~~~L~~~AK~~~i~vilighvTK~G~iAGp~~LeH~V 234 (479)
T Consensus 103 Qri~lARal-~~~p~illlDEpt----s~LD~~--~---~~~i~~~l~~~~~--~~Tvi~vtH~--------~~~~~-~~ 161 (171)
T cd03228 103 QRIAIARAL-LRDPPILILDEAT----SALDPE--T---EALILEALRALAK--GKTVIVIAHR--------LSTIR-DA 161 (171)
T ss_pred HHHHHHHHH-HHCCCEEEEECCC----CCCCHH--H---HHHHHHHHHHHCC--CCEEEEEECC--------HHHHH-HC
T ss_conf 999999999-7489989995776----679989--9---9999999999809--9989999579--------99997-09
Q ss_pred HEEEEEE
Q ss_conf 3027851
Q gi|254780334|r 235 DAVLYFE 241 (479)
Q Consensus 235 D~vl~~e 241 (479)
T Consensus 162 D~v~~l~ 168 (171)
T cd03228 162 DRIIVLD 168 (171)
T ss_pred CEEEEEE
T ss_conf 9999981