>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

Probab=98.00 E-value=0.00013 Score=53.25 Aligned_cols=137 Identities=22% Similarity=0.333 Sum_probs=81.5 Q ss_pred CCCCCCEEEEECCCCCCHHHHHHHHHHHHHCCCCCEEEEECCCCH---HHHHHHHHHCCCCCCCHHEECC-CCHHHH--- Q ss_conf 857870899954987518899999999985039819999864630---4788887520157751000034-788999--- Q gi|254780334|r 86 GFVRGSVILVGGDPGIGKSTLLMQTAASLAYKKHRITYVSGEEAI---GQIRLRAQRLNTINSSVYIAIE-TNVEDI--- 158 (479) Q Consensus 86 Gl~~Gs~~Li~G~PGvGKSTL~Lqia~~~a~~g~~vlYvS~EEs~---~Qi~~Ra~Rl~~~~~~i~~~~e-~~l~~i--- 158 (479) T Consensus 22 ~i~~Ge~~~ivGpSG~GKSTllr~i~-Gl~~p~~G~I~~~g~~i~~~~~~~~~~rr~ig~vFQ~~~L~p~~tv~eNv~~~ 100 (178) T cd03229 22 NIEAGEIVALLGPSGSGKSTLLRCIA-GLEEPDSGSILIDGEDLTDLEDELPPLRRRIGMVFQDFALFPHLTVLENIALG 100 (178) T ss_pred EECCCCEEEEECCCCCHHHHHHHHHH-CCCCCCCEEEEECCEECCCCCCHHHHHCCCEEEEECCCCCCCCCCHHHHHCEE T ss_conf 98899899999999983999999998-59999963999999999888610245417759992699889989289960081 Q ss_pred ----------HHHHHHCCCCCEEEECHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEEEECCCCCCCCHH Q ss_conf ----------9999731698289972168766542044556367999999999997530797899986303665433114 Q gi|254780334|r 159 ----------IATLITNEKPDLVIIDSIQTLWSQTAESSPGTVIQVRTSVQAMIQYAKKNGVAMVLVGHVTKEGQIAGPR 228 (479) Q Consensus 159 ----------l~~~i~~~~~~~vVIDSIQtl~~~~~~s~~GsvsQvre~~~~L~~~AK~~~i~vilighvTK~G~iAGp~ 228 (479) T Consensus 101 LSGGq~QRvaIARAL-~~~P~ill~DEPts----~LD~-----~~~~~i~~~l~~l~~~~~~t~i~vTHd~--------~ 162 (178) T cd03229 101 LSGGQQQRVALARAL-AMDPDVLLLDEPTS----ALDP-----ITRREVRALLKSLQAQLGITVVLVTHDL--------D 162 (178) T ss_pred CCCHHHHHHHHHHHH-HCCCCEEEEECCCC----CCCH-----HHHHHHHHHHHHHHHHHCCEEEEECCCH--------H T ss_conf 772688999999998-52999999708976----4799-----9999999999999996499999998999--------9 Q ss_pred HHHHHHHEEEEEE Q ss_conf 5787753027851 Q gi|254780334|r 229 VIEHMVDAVLYFE 241 (479) Q Consensus 229 ~LeH~VD~vl~~e 241 (479) T Consensus 163 ~a~~~aDri~vm~ 175 (178) T cd03229 163 EAARLADRVVVLR 175 (178) T ss_pred HHHHHCCEEEEEE T ss_conf 9998699999992

HHsearch alignment for GI: 254780334 and conserved domain: cd03229