HHsearch alignment for GI: 254780334 and conserved domain: cd03230
>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.99 E-value=0.00024 Score=51.25 Aligned_cols=136 Identities=19% Similarity=0.286 Sum_probs=79.2
Q ss_pred CCCCCCEEEEECCCCCCHHHHHHHHHHHHHCCCCCEEEEECCCCHHHHHHHHHHCCCCCCCHHEECCCCHHH-H------
Q ss_conf 857870899954987518899999999985039819999864630478888752015775100003478899-9------
Q gi|254780334|r 86 GFVRGSVILVGGDPGIGKSTLLMQTAASLAYKKHRITYVSGEEAIGQIRLRAQRLNTINSSVYIAIETNVED-I------ 158 (479)
Q Consensus 86 Gl~~Gs~~Li~G~PGvGKSTL~Lqia~~~a~~g~~vlYvS~EEs~~Qi~~Ra~Rl~~~~~~i~~~~e~~l~~-i------ 158 (479)
T Consensus 22 ~i~~Gei~gl~G~NGaGKSTLl~~i~Gl~~p~~G~-i~i~g~~~~~~~~~~~~~ig~v~q~~~l~~~ltv~e~l~LSgG~ 100 (173)
T cd03230 22 TVEKGEIYGLLGPNGAGKTTLIKIILGLLKPDSGE-IKVLGKDIKKEPEEVKRRIGYLPEEPSLYENLTVRENLKLSGGM 100 (173)
T ss_pred EECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCE-EEECCEECCCCHHHHHCCEEEEECCCCCCCCCCHHHHHHCCHHH
T ss_conf 88799399998789979999999997685778788-99999998868488865789995687667126778986339899
Q ss_pred -----HHHHHHCCCCCEEEECHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEEEECCCCCCCCHHHHHHH
Q ss_conf -----999973169828997216876654204455636799999999999753079789998630366543311457877
Q gi|254780334|r 159 -----IATLITNEKPDLVIIDSIQTLWSQTAESSPGTVIQVRTSVQAMIQYAKKNGVAMVLVGHVTKEGQIAGPRVIEHM 233 (479)
Q Consensus 159 -----l~~~i~~~~~~~vVIDSIQtl~~~~~~s~~GsvsQvre~~~~L~~~AK~~~i~vilighvTK~G~iAGp~~LeH~ 233 (479)
T Consensus 101 kqrv~ia~al-~~~p~lllLDEPt----~gLD--~~~---~~~i~~~i~~l~~-~g~tvi~~tH~l--------~~~~~~ 161 (173)
T cd03230 101 KQRLALAQAL-LHDPELLILDEPT----SGLD--PES---RREFWELLRELKK-EGKTILLSSHIL--------EEAERL 161 (173)
T ss_pred HHHHHHHHHH-HCCCCEEEECCCC----CCCC--HHH---HHHHHHHHHHHHH-CCCEEEEECCCH--------HHHHHH
T ss_conf 9999999999-6499999990886----5799--999---9999999999996-899999992838--------999986
Q ss_pred HHEEEEEE
Q ss_conf 53027851
Q gi|254780334|r 234 VDAVLYFE 241 (479)
Q Consensus 234 VD~vl~~e 241 (479)
T Consensus 162 ~dri~vl~ 169 (173)
T cd03230 162 CDRVAILN 169 (173)
T ss_pred CCEEEEEE
T ss_conf 99999993