HHsearch alignment for GI: 254780334 and conserved domain: cd03233
>cd03233 ABC_PDR_domain1 The pleiotropic drug resistance (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.91 E-value=0.00022 Score=51.46 Aligned_cols=142 Identities=20% Similarity=0.185 Sum_probs=76.8
Q ss_pred HHHHHCCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHCC---CCCEEEEECCCCHHHHHHHHHH-CC-CCCCCHHEECCC
Q ss_conf 888865985787089995498751889999999998503---9819999864630478888752-01-577510000347
Q gi|254780334|r 79 LDRVTGGGFVRGSVILVGGDPGIGKSTLLMQTAASLAYK---KHRITYVSGEEAIGQIRLRAQR-LN-TINSSVYIAIET 153 (479)
Q Consensus 79 LDrvLGGGl~~Gs~~Li~G~PGvGKSTL~Lqia~~~a~~---g~~vlYvS~EEs~~Qi~~Ra~R-l~-~~~~~i~~~~e~ 153 (479)
T Consensus 23 L~~-is~~i~~Gei~~llG~nGsGKSTLl~~l~G~~~~~~~~~G~i~~-~g~~~-~~~~~~~~~~~~~v~q~~~~-~~~l 98 (202)
T cd03233 23 LKD-FSGVVKPGEMVLVLGRPGSGCSTLLKALANRTEGNVSVEGDIHY-NGIPY-KEFAEKYPGEIIYVSEEDVH-FPTL 98 (202)
T ss_pred EEC-EEEEECCCEEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEEEEE-CCEEC-CHHHHHHHCCEEEECCCCCC-CCCC
T ss_conf 977-08898098499999899998899999983787898751379999-99994-05148642019998673223-7688
Q ss_pred CHHHH-------------------------HHHHHHCCCCCEEEECHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHC
Q ss_conf 88999-------------------------99997316982899721687665420445563679999999999975307
Q gi|254780334|r 154 NVEDI-------------------------IATLITNEKPDLVIIDSIQTLWSQTAESSPGTVIQVRTSVQAMIQYAKKN 208 (479)
Q Consensus 154 ~l~~i-------------------------l~~~i~~~~~~~vVIDSIQtl~~~~~~s~~GsvsQvre~~~~L~~~AK~~ 208 (479)
T Consensus 99 tv~e~l~~~~~~~~~~~~~~LSgGqkqRv~iA~aL-~~~P~illlDEPt----~gLD~-----~~~~~i~~~l~~l~~~~ 168 (202)
T cd03233 99 TVRETLDFALRCKGNEFVRGISGGERKRVSIAEAL-VSRASVLCWDNST----RGLDS-----STALEILKCIRTMADVL 168 (202)
T ss_pred CHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHH-HHCCCEEEEECCC----CCCCH-----HHHHHHHHHHHHHHHHC
T ss_conf 09999999998465874445899999999999999-5299889983876----56899-----99999999999999877
Q ss_pred CCEEEEEEEECCCCCCCCHHHHHHHHHEEEEEE
Q ss_conf 978999863036654331145787753027851
Q gi|254780334|r 209 GVAMVLVGHVTKEGQIAGPRVIEHMVDAVLYFE 241 (479)
Q Consensus 209 ~i~vilighvTK~G~iAGp~~LeH~VD~vl~~e 241 (479)
T Consensus 169 ~~t~ii~~~~~~-------~~~~~~~Dri~vl~ 194 (202)
T cd03233 169 KTTTFVSLYQAS-------DEIYDLFDKVLVLY 194 (202)
T ss_pred CCEEEEEEECCH-------HHHHHHCCEEEEEE
T ss_conf 998999990698-------99999699999995