HHsearch alignment for GI: 254780334 and conserved domain: cd03256
>cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system. Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.90 E-value=0.00044 Score=49.35 Aligned_cols=137 Identities=17% Similarity=0.288 Sum_probs=77.1
Q ss_pred CCCCCCEEEEECCCCCCHHHHHHHHHHHHHCCCCCEEEEECCCC----HHHHHHHHHHCCCCCCCHHEECC-CCHHHH--
Q ss_conf 85787089995498751889999999998503981999986463----04788887520157751000034-788999--
Q gi|254780334|r 86 GFVRGSVILVGGDPGIGKSTLLMQTAASLAYKKHRITYVSGEEA----IGQIRLRAQRLNTINSSVYIAIE-TNVEDI-- 158 (479)
Q Consensus 86 Gl~~Gs~~Li~G~PGvGKSTL~Lqia~~~a~~g~~vlYvS~EEs----~~Qi~~Ra~Rl~~~~~~i~~~~e-~~l~~i-- 158 (479)
T Consensus 23 ~i~~Ge~~~iiGpsGsGKSTLl~~i~g-l~~p~~G~I~~~g~~i~~~~~~~l~~~R~~ig~vfQ~~~l~~~ltV~enV~~ 101 (241)
T cd03256 23 SINPGEFVALIGPSGAGKSTLLRCLNG-LVEPTSGSVLIDGTDINKLKGKALRQLRRQIGMIFQQFNLIERLSVLENVLS 101 (241)
T ss_pred EECCCCEEEEECCCCCHHHHHHHHHHC-CCCCCCEEEEECCEECCCCCHHHHHHHHCCCEEECCCCCCCCCCCHHHHHHH
T ss_conf 999998999999998339999999974-9999855999999998989989999986491898079978998899999863
Q ss_pred -----------------------------------------------------HHHHHHCCCCCEEEECHHHHHHHHHHC
Q ss_conf -----------------------------------------------------999973169828997216876654204
Q gi|254780334|r 159 -----------------------------------------------------IATLITNEKPDLVIIDSIQTLWSQTAE 185 (479)
Q Consensus 159 -----------------------------------------------------l~~~i~~~~~~~vVIDSIQtl~~~~~~ 185 (479)
T Consensus 102 g~~~~~~~~~~~~~~~~~~~~~~~~~~L~~vgl~~~~~~~~~~LSGGq~QRVaIARAL-~~~P~ill~DEPt----s~LD 176 (241)
T cd03256 102 GRLGRRSTWRSLFGLFPKEEKQRALAALERVGLLDKAYQRADQLSGGQQQRVAIARAL-MQQPKLILADEPV----ASLD 176 (241)
T ss_pred HHHCCCHHHHHHCCCCCHHHHHHHHHHHHHCCCHHHHHCCCCCCCHHHHHHHHHHHHH-HCCCCEEEECCCC----CCCC
T ss_conf 6541330557761799599999999999976997787678441480289999999998-5599989962876----6589
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHCCCEEEEEEEECCCCCCCCHHHHHHHHHEEEEEE
Q ss_conf 45563679999999999975307978999863036654331145787753027851
Q gi|254780334|r 186 SSPGTVIQVRTSVQAMIQYAKKNGVAMVLVGHVTKEGQIAGPRVIEHMVDAVLYFE 241 (479)
Q Consensus 186 s~~GsvsQvre~~~~L~~~AK~~~i~vilighvTK~G~iAGp~~LeH~VD~vl~~e 241 (479)
T Consensus 177 -----~~~~~~i~~ll~~l~~~~g~Tii~vtH--------dl~~a~~~adri~~l~ 219 (241)
T cd03256 177 -----PASSRQVMDLLKRINREEGITVIVSLH--------QVDLAREYADRIVGLK 219 (241)
T ss_pred -----HHHHHHHHHHHHHHHHHCCCEEEEECC--------CHHHHHHHCCEEEEEE
T ss_conf -----999999999999999851989999957--------9899999699899996