HHsearch alignment for GI: 254780334 and conserved domain: cd03258

>cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.88  E-value=0.00041  Score=49.53  Aligned_cols=136  Identities=19%  Similarity=0.340  Sum_probs=77.6

Q ss_pred             CCCCCCEEEEECCCCCCHHHHHHHHHHHHHCCCCCEEEEECCC----CHHHH-HHHHHHCCCCCCCHHEECCCC-HHHH-
Q ss_conf             8578708999549875188999999999850398199998646----30478-888752015775100003478-8999-
Q gi|254780334|r   86 GFVRGSVILVGGDPGIGKSTLLMQTAASLAYKKHRITYVSGEE----AIGQI-RLRAQRLNTINSSVYIAIETN-VEDI-  158 (479)
Q Consensus        86 Gl~~Gs~~Li~G~PGvGKSTL~Lqia~~~a~~g~~vlYvS~EE----s~~Qi-~~Ra~Rl~~~~~~i~~~~e~~-l~~i-  158 (479)
T Consensus        27 ~i~~Ge~~~ivG~SGsGKSTllr~i~gL~~p~sG~I-~~~g~~i~~~~~~~~~~~R-r~ig~VFQ~~~L~~~~tv~~nv~  104 (233)
T cd03258          27 SVPKGEIFGIIGRSGAGKSTLIRCINGLERPTSGSV-LVDGTDLTLLSGKELRKAR-RRIGMIFQHFNLLSSRTVFENVA  104 (233)
T ss_pred             EECCCCEEEEECCCCCHHHHHHHHHHCCCCCCCCEE-EECCEECCCCCHHHHHHHH-CCCCEEECCCCCCCCCCHHHHHH
T ss_conf             999999999988980589999999967999998089-9999998979999999986-25877943778899883999999


Q ss_pred             ----------------------------------------------HHHHHHCCCCCEEEECHHHHHHHHHHCCCCCCHH
Q ss_conf             ----------------------------------------------9999731698289972168766542044556367
Q gi|254780334|r  159 ----------------------------------------------IATLITNEKPDLVIIDSIQTLWSQTAESSPGTVI  192 (479)
Q Consensus       159 ----------------------------------------------l~~~i~~~~~~~vVIDSIQtl~~~~~~s~~Gsvs  192 (479)
T Consensus       105 ~~l~~~~~~~~~~~~r~~~lL~~vgL~~~~~~yP~eLSGGq~QRVaIARAL-~~~P~lllaDEPTs~----LD-----~~  174 (233)
T cd03258         105 LPLEIAGVPKAEIEERVLELLELVGLEDKADAYPAQLSGGQKQRVGIARAL-ANNPKVLLCDEATSA----LD-----PE  174 (233)
T ss_pred             HHHHHCCCCHHHHHHHHHHHHHHCCCHHHHHCCCCCCCHHHHHHHHHHHHH-HCCCCEEEECCCCCC----CC-----HH
T ss_conf             999974999999999999999867991676269652677888999999998-339989996597664----69-----88


Q ss_pred             HHHHHHHHHHHHHHHCCCEEEEEEEECCCCCCCCHHHHHHHHHEEEEEE
Q ss_conf             9999999999975307978999863036654331145787753027851
Q gi|254780334|r  193 QVRTSVQAMIQYAKKNGVAMVLVGHVTKEGQIAGPRVIEHMVDAVLYFE  241 (479)
Q Consensus       193 Qvre~~~~L~~~AK~~~i~vilighvTK~G~iAGp~~LeH~VD~vl~~e  241 (479)
T Consensus       175 ~~~~il~ll~~l~~e~g~t~i~vTH--------Dl~~~~~~adrv~vm~  215 (233)
T cd03258         175 TTQSILALLRDINRELGLTIVLITH--------EMEVVKRICDRVAVME  215 (233)
T ss_pred             HHHHHHHHHHHHHHHHCCEEEEECC--------CHHHHHHHCCEEEEEE
T ss_conf             9999999999999972989999898--------9999998699799997