HHsearch alignment for GI: 254780334 and conserved domain: cd03258
>cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.88 E-value=0.00041 Score=49.53 Aligned_cols=136 Identities=19% Similarity=0.340 Sum_probs=77.6
Q ss_pred CCCCCCEEEEECCCCCCHHHHHHHHHHHHHCCCCCEEEEECCC----CHHHH-HHHHHHCCCCCCCHHEECCCC-HHHH-
Q ss_conf 8578708999549875188999999999850398199998646----30478-888752015775100003478-8999-
Q gi|254780334|r 86 GFVRGSVILVGGDPGIGKSTLLMQTAASLAYKKHRITYVSGEE----AIGQI-RLRAQRLNTINSSVYIAIETN-VEDI- 158 (479)
Q Consensus 86 Gl~~Gs~~Li~G~PGvGKSTL~Lqia~~~a~~g~~vlYvS~EE----s~~Qi-~~Ra~Rl~~~~~~i~~~~e~~-l~~i- 158 (479)
T Consensus 27 ~i~~Ge~~~ivG~SGsGKSTllr~i~gL~~p~sG~I-~~~g~~i~~~~~~~~~~~R-r~ig~VFQ~~~L~~~~tv~~nv~ 104 (233)
T cd03258 27 SVPKGEIFGIIGRSGAGKSTLIRCINGLERPTSGSV-LVDGTDLTLLSGKELRKAR-RRIGMIFQHFNLLSSRTVFENVA 104 (233)
T ss_pred EECCCCEEEEECCCCCHHHHHHHHHHCCCCCCCCEE-EECCEECCCCCHHHHHHHH-CCCCEEECCCCCCCCCCHHHHHH
T ss_conf 999999999988980589999999967999998089-9999998979999999986-25877943778899883999999
Q ss_pred ----------------------------------------------HHHHHHCCCCCEEEECHHHHHHHHHHCCCCCCHH
Q ss_conf ----------------------------------------------9999731698289972168766542044556367
Q gi|254780334|r 159 ----------------------------------------------IATLITNEKPDLVIIDSIQTLWSQTAESSPGTVI 192 (479)
Q Consensus 159 ----------------------------------------------l~~~i~~~~~~~vVIDSIQtl~~~~~~s~~Gsvs 192 (479)
T Consensus 105 ~~l~~~~~~~~~~~~r~~~lL~~vgL~~~~~~yP~eLSGGq~QRVaIARAL-~~~P~lllaDEPTs~----LD-----~~ 174 (233)
T cd03258 105 LPLEIAGVPKAEIEERVLELLELVGLEDKADAYPAQLSGGQKQRVGIARAL-ANNPKVLLCDEATSA----LD-----PE 174 (233)
T ss_pred HHHHHCCCCHHHHHHHHHHHHHHCCCHHHHHCCCCCCCHHHHHHHHHHHHH-HCCCCEEEECCCCCC----CC-----HH
T ss_conf 999974999999999999999867991676269652677888999999998-339989996597664----69-----88
Q ss_pred HHHHHHHHHHHHHHHCCCEEEEEEEECCCCCCCCHHHHHHHHHEEEEEE
Q ss_conf 9999999999975307978999863036654331145787753027851
Q gi|254780334|r 193 QVRTSVQAMIQYAKKNGVAMVLVGHVTKEGQIAGPRVIEHMVDAVLYFE 241 (479)
Q Consensus 193 Qvre~~~~L~~~AK~~~i~vilighvTK~G~iAGp~~LeH~VD~vl~~e 241 (479)
T Consensus 175 ~~~~il~ll~~l~~e~g~t~i~vTH--------Dl~~~~~~adrv~vm~ 215 (233)
T cd03258 175 TTQSILALLRDINRELGLTIVLITH--------EMEVVKRICDRVAVME 215 (233)
T ss_pred HHHHHHHHHHHHHHHHCCEEEEECC--------CHHHHHHHCCEEEEEE
T ss_conf 9999999999999972989999898--------9999998699799997